Statistical analysis and molecular markers in plant breeding for heterosis (review)

Author(s):  
Yu.V. Chesnokov ◽  
◽  
N.V. Kocherina ◽  
A.M. Artemyeva ◽  
◽  
...  

Conventionally, establishment of relationship between the genotype and phenotype through genetic analysis was considered as key to success in plant breeding. The discovery of molecular markers has changed the entire scenario of genome analysis. Coinheritance of a gene of interest and a marker suggests that they are physically close on the chromosome. A marker must be polymorphic in nature for their identification and utilization. Such polymorphism can be detected at three levels: phenotype (morphological), difference in biomolecules (biochemical), or differences in the nucleotide sequence of DNA (molecular). These markers act as a versatile tool and find their importance in taxonomy, plant breeding, gene mapping, cultivar identification, and forensic science. They have several advantages over the conventional methods of plant breeding for developing new varieties with higher rate of success. This chapter covers the basic principles and applications of various types of markers with special emphasis on molecular markers.


2018 ◽  
Vol 16 (1) ◽  
pp. 1-15 ◽  
Author(s):  
Samriti Sharma ◽  
Ankita Sharma

Author(s):  
Beniamin Oskar Grabarek ◽  
Maciej Dąbala ◽  
Tomasz Kasela ◽  
Marcin Gralewski ◽  
Dorian Gładysz

Background: Increased levels of phosphorylated ERK and p38 MAPK proteins have been observed in psoriatic skin biopsies compared to controls, which may be associated with an impaired expression pattern of dual activity protein phosphatase (DUSP). Objective: The purpose of this study was to assess changes in the expression profile of mRNA DUSP 1-7 and miRNA regulating their expression in human keratinocyte cells (HaCaT) had exposed to the liposaccharide A (LPS). Methods: HaCaT was exposed to 1 µg/ml LPS and next adalimumab by 2,8,24h compared to untreated cells. The microarray method was used to analyze expression pattern of mRNAs, miRNAs, and ELISA to evaluate changes in the level of the proteins. RTqPCR was used to validate the microarray data. Transcriptome Analysis Console and Statistica Software 13 PL were used in statistical analysis (p<0.05). Results: The highest changes in expression was observed for DUSP2 (FC +11.12) and DUSP5 (FC +5.53) in HaCaT culture after 2 hours exposition on adalimumab. It was observed that miR-1275 (FC -2.39) and miR-34a (FC +6.52) might regulate level of DUSP2, and miR-27a (FC +3.55), miR-27b (FC +2.87) are involved in DUSP5 expression. Conclusion: The results obtained suggest that DUSP2 and DUSP5 may be considered as complementary molecular markers in the diagnosis and monitoring of the effectiveness of psoriasis therapy. It was confirmed that hsa-miR-34a, hsa-miR-1275, hsa-miR-3188, hsa-miR-382, hsa-miR-27a, hsa-miR-27b, hsa-miR-16 have the highest influence on the expression pattern of DUSP1-7.


Euphytica ◽  
2006 ◽  
Vol 158 (3) ◽  
pp. 305-312 ◽  
Author(s):  
Stine Tuvesson ◽  
Christophe Dayteg ◽  
Per Hagberg ◽  
Outi Manninen ◽  
Pirjo Tanhuanpää ◽  
...  

2013 ◽  
Vol 47 (3) ◽  
pp. 188-195 ◽  
Author(s):  
Yu. M. Sivolap

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