USING DNA BARCODE TO IMPROVE THE IDENTIFICATION OF MARINE FISH LARVAE, CASE STUDY COASTAL WATER NEAR JAKARTA AND BANDA SEA, INDONESIA

The sustainability of the exploitation of the Indonesian fishes depends heavily on many of fish’s basic information including both larvae distribution and dispersal. However, the identification of fish larvae and juvenile to species is very limited. In this study, we employed DNA barcoding techniques to identify marine fish larvae to a species level in Jakarta Bay and Banda Sea by comparing the querries with sequences from adult stage as reference library to contribute on biodiversity information on that particular area. The result revealed that in Jakarta Bay, the molecular marker of a 471 bp region of the mitchondrial cyctochrome c oxidase I gene (COI) has been successfully found to be species-specific, genetic distance within species (0.0 - 1.30 percent). There are total of 8 families, 5 genera and 5 species from a total 15 successful PCR that could be used to calculate the accuracy of larval fish identification in three taxonomic categories. Meanwhile in Banda Sea, for the adult specimens, after some of PCR experiment, we have successfully amplified 27 individuals, only 8 sequences available. There are a total 326 eggs and larvae which been collected from 19 stations, of the 28 successfully amplified PCR samples, 11 sequences were available for DNA analysis and at least 10 species used Banda Sea and surrounding area as their spawning ground. We prove the ability of COI barcodes to identify species level resolution from query sequences and to classify species from distinct geographical origins and determine of how the data retrieved give important information for proposing plans for conserving and managing of fisheries in the sea waters.

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Fish larvae from the Gulf of California to Colima, Mexico: an update

Check List ◽

10.15560/10.1.106 ◽

2014 ◽

Vol 10 (1) ◽

pp. 106 ◽

Cited By ~ 3

Author(s):

Raymundo Avendaño-Ibarra ◽

Gerardo Aceves-Medina ◽

Enrique Godínez-Domínguez ◽

Roxana De Silva-Dávila ◽

S. Patricia A. Jiménez-Rosenberg ◽

...

Keyword(s):

New Taxa ◽

Marine Fish ◽

Gulf Of California ◽

Fish Larvae ◽

Abundant Species ◽

Species Level ◽

Marine Fish Larvae

An updated taxonomic list of marine fish larvae from the Gulf of California to Colima, Mexico is presented. A total of 579 taxa belonging to 119 families, 256 genera, and 423 species were recorded. The list was compiled using 14 publications on fish larvae research (1974-2012), and the fish larvae identified from 315 samples collected with Bongo nets during 10 oceanographic cruises made from the Gulf of California to Bahía de Banderas, Mexico, from 2003 to 2007 (this study). The most important families in this study were the Myctophidae (28.3%), Engraulidae (25.0%), and Clupeidae (15.4%). The most abundant species were Cetengraulis mysticetus (18.2%), Benthosema panamense (13.9%), and Opisthonema libertate (12.7%). The compiled taxonomic list shows the addition of 296 new taxa to the previous list published 10 years ago, and also the need of an increase in the effort on the taxonomy of fish larvae forms not identified to species level.

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Isolation, morphometry, and culture of Colurella sp. (Rotifera: Ploimida)

AQUATIC SCIENCE & MANAGEMENT ◽

10.35800/jasm.1.2.2013.7276 ◽

2013 ◽

Vol 1 (2) ◽

pp. 143

Author(s):

Petrus P Letsoin ◽

Henneke Pangkey ◽

Julius Sampekalo ◽

Inneke F.M Rumengan ◽

Stenly Wullur ◽

...

Keyword(s):

Body Size ◽

Marine Fish ◽

Fish Larvae ◽

Nannochloropsis Oculata ◽

Tropical Fish ◽

Sampling Location ◽

Larval Rearing ◽

Brachionus Rotundiformis ◽

Marine Fish Larvae ◽

Significant Difference

The rotifer Brachionus rotundiformis (total body length 240.59±10.24 μm, lorica length 175.28±9.18 μm, and lorica width 124.28±7.76μm) is commonly used as starter food in the larval rearing of marine fish. But, larvae of some marine tropical fish species required starter food with body size smaller than B. rotundiformis. The present study was aimed to isolate minute rotifers from nature and to assess the possibility of culturing these rotifers. Sampling of rotifers was conducted in an estuary of Mangket (Kema-Minut), using plankton net (mesh size 40 µm). A trial of culturing the rotifers was conducted at salinities of 10, 20 and 30 ppt by using a microalga, Nannochloropsis oculata. A species of rotifer identified as Colurella sp. (family Lepadellidae) was successfully isolated from the sampling location. Body size of Colurella sp. was extremely small (Total length 123.22±5.45 μm, lorica length 95.96±3.81 μm, and lorica width 53.57±3.11 μm), which were smaller than Brachionus rotundiformis SS-type as a conventional starter food for marine fish larvae. Results of culturing the minute rotifer Colurella sp. showed that the species grew well at salinities of 10, 20 and 30 ppt with no significant difference among treatments (ANOVA, p>0.05), indicating a potential use of minute rotifer Colurellasp. as starter food for marine fish larvae. Rotifera Branchionus rotundiformis (ukuran tubuh: panjang total 240,59±10,24 μm, panjang lorika 175,28±9,18 μm, dan lebar lorika 124,28±7,76μm) sering digunakan sebagai pakan awal pemeliharaan larva ikan laut. Namun, larva beberapa spesis ikan laut tropis membutuhkan pakan awal berukuran tubuh lebih kecil dari Branchionus rotundiformis. Penelitian ini bertujuan untuk mendapatkan minute rotifer dari alam (berukuran tubuh lebih kecil dari B. rotundiformis) dan menguji kemungkinan pemeliharaannya. Sampling rotifer dilakukan di perairan estuari Desa Mangket (Kema-Minut), menggunakan plankton net (ukuran mata jaring 40 µm). Uji coba pemeliharaan dilakukan pada salinitas (10, 20, dan 30 ppt) dengan menggunakan Nannochloropsis oculata. Satu spesies minute rotifer yang teridentifikasi sebagai Colurella sp. (family Lepadellidae) berhasil diisolasi dari lokasi sampling. Colurella sp. memiliki ukuran tubuh sangat kecil (panjang total [PT] 123,22±5,45 µm, panjang lorika [PL] 95,96±3,81 µm, dan lebar lorik [LL] 53,57±3,11 µm) yang mana lebih kecil dari Branchionus rotundiformis tipe-SS sebagai pakan awal larva ikan laut. Hasil uji coba pemeliharaan minute rotifer Colurella sp. menunjukkan bahwa spesis ini dapat tumbuh pada salinitas 10, 20, dan 30 ppt dengan perbedaan kepadatan populasi yang tidak signifikan antar perlakuan (Uji ANOVA, p > 0.05) mengindikasikan potensi pemanfaatan minute rotifer Colurella sp. sebagai pakan awal larva ikan laut.

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A Preliminary Survey on the Planktonic Biota in a Hypersaline Pond of Messolonghi Saltworks (W. Greece)

Diversity ◽

10.3390/d13060270 ◽

2021 ◽

Vol 13 (6) ◽

pp. 270

Author(s):

George N. Hotos

Keyword(s):

New Species ◽

Marine Fish ◽

Broad Spectrum ◽

Fish Larvae ◽

Live Food ◽

Preliminary Survey ◽

Genus Level ◽

Marine Fish Larvae ◽

Alternaria Sp ◽

Different Strains

During a survey in 2015, an impressive assemblage of organisms was found in a hypersaline pond of the Messolonghi saltworks. The salinity ranged between 50 and 180 ppt, and the organisms that were found fell into the categories of Cyanobacteria (17 species), Chlorophytes (4 species), Diatoms (23 species), Dinoflagellates (1 species), Protozoa (40 species), Rotifers (8 species), Copepods (1 species), Artemia sp., one nematode and Alternaria sp. (Fungi). Fabrea salina was the most prominent protist among all samples and salinities. This ciliate has the potential to be a live food candidate for marine fish larvae. Asteromonas gracilis proved to be a sturdy microalga, performing well in a broad spectrum of culture salinities. Most of the specimens were identified to the genus level only. Based on their morphology, as there are no relevant records in Greece, there is a possibility for some to be either new species or strikingly different strains of certain species recorded elsewhere.

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