Whole genome de-novo assembly and annotation protocol for Apostichopus japonicus genome v1 (protocols.io.gmabu2e)

protocols.io ◽  
2016 ◽  
Author(s):  
Jihoon Jo ◽  
Jooseong Oh ◽  
Hyun Gwan ◽  
Hyun Hee ◽  
Sung Gwon ◽  
...  
Keyword(s):  
De Novo Assembly ◽  
De Novo ◽  
Apostichopus Japonicus ◽  
Whole Genome

scholarly journals Employing whole genome mapping for optimal de novo assembly of bacterial genomes

2014 ◽  
Vol 7 (1) ◽  
pp. 484 ◽  
Author(s):  
Basil Xavier ◽  
Julia Sabirova ◽  
Moons Pieter ◽  
Jean-Pierre Hernalsteens ◽  
Henri de Greve ◽  
...  
Keyword(s):  
De Novo Assembly ◽  
De Novo ◽  
Genome Mapping ◽  
Whole Genome ◽  
Bacterial Genomes ◽  
Whole Genome Mapping

scholarly journals Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis)

2020 ◽  
Author(s):  
Sabyasachi Mukherjee ◽  
Zexi Cai ◽  
Anupama Mukherjee ◽  
Imsusosang Longkumer ◽  
Moonmoon Mech ◽  
...  
Keyword(s):  
Genome Sequence ◽  
De Novo Assembly ◽  
De Novo ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Genomic Architecture

scholarly journals Enhanced De Novo Assembly of High Throughput Pyrosequencing Data Using Whole Genome Mapping

PLoS ONE ◽  
2013 ◽  
Vol 8 (4) ◽  
pp. e61762 ◽  
Author(s):  
Fatma Onmus-Leone ◽  
Jun Hang ◽  
Robert J. Clifford ◽  
Yu Yang ◽  
Matthew C. Riley ◽  
...  
Keyword(s):  
High Throughput ◽  
De Novo Assembly ◽  
De Novo ◽  
Genome Mapping ◽  
Whole Genome ◽  
Whole Genome Mapping

scholarly journals A pilot study for channel catfish whole genome sequencing and de novo assembly

BMC Genomics ◽  
2011 ◽  
Vol 12 (1) ◽  
Author(s):  
Yanliang Jiang ◽  
Jianguo Lu ◽  
Eric Peatman ◽  
Huseyin Kucuktas ◽  
Shikai Liu ◽  
...  
Keyword(s):  
Pilot Study ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Channel Catfish ◽  
De Novo Assembly ◽  
De Novo ◽  
Whole Genome

scholarly journals Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis)

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Sabyasachi Mukherjee ◽  
Zexi Cai ◽  
Anupama Mukherjee ◽  
Imsusosang Longkumer ◽  
Moonmoon Mech ◽  
...  
Keyword(s):  
Genome Sequence ◽  
De Novo Assembly ◽  
De Novo ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Genomic Architecture

scholarly journals Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3

2018 ◽  
Vol 6 (11) ◽  
Author(s):  
Khawla Seddiki ◽  
François Godart ◽  
Riccardo Aiese Cigliano ◽  
Walter Sanseverino ◽  
Mohamed Barakat ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
De Novo Assembly ◽  
Complete Genome ◽  
De Novo ◽  
Gc Content ◽  
Marine Species ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Coding Sequences

ABSTRACT Thraustochytrids are ecologically and biotechnologically relevant marine species. We report here the de novo assembly and annotation of the whole-genome sequence of a new thraustochytrid strain, CCAP_4062/3. The genome size was estimated at 38.7 Mb with 11,853 predicted coding sequences, and the GC content was scored at 57%.

scholarly journals Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

2014 ◽  
Vol 24 (8) ◽  
pp. 1384-1395 ◽  
Author(s):  
Rei Kajitani ◽  
Kouta Toshimoto ◽  
Hideki Noguchi ◽  
Atsushi Toyoda ◽  
Yoshitoshi Ogura ◽  
...  
Keyword(s):  
De Novo Assembly ◽  
De Novo ◽  
Whole Genome Shotgun ◽  
Whole Genome ◽  
Short Reads

scholarly journals Whole Genome Analyses of Chinese Population and De Novo Assembly of A Northern Han Genome

2019 ◽  
Vol 17 (3) ◽  
pp. 229-247 ◽  
Author(s):  
Zhenglin Du ◽  
Liang Ma ◽  
Hongzhu Qu ◽  
Wei Chen ◽  
Bing Zhang ◽  
...  
Keyword(s):  
De Novo Assembly ◽  
Chinese Population ◽  
De Novo ◽  
Whole Genome ◽  
Genome Analyses
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