Challenges and prospects for developing genetic resistance in common wheat against stem rust in Western Siberia

Current studies on bread wheat resistance to stem rust have two main subjects: complex analysis for resistance of bread wheat germplasm using molecular markers, field screening and laboratory tests against samples of different fungal populations, and searching for sources and donors of new genes and gene loci, including cultivated and wild relatives of wheat. To achieve adequate genetic control of the disease, an integral approach is important, incorporating both data on sources of resistance and relevant information on pathogenic populations existing in the region, their race composition and dynamics of virulence genes. The analysis of experimental data on field screening of bread wheat varieties from the CIMMYT nursery germplasm for stem rust resistance in the Omsk and Novosibirsk regions, together with laboratory testing of infection samples on the international set of wheat differential lines, suggests that a separate “Asian” population of Puccinia graminis f. sp. tritici exists in Western Siberia and the Altai Territory. Wheat resistance genes Sr2, Sr6Ai#2, Sr24, Sr25, Sr26, Sr31, Sr39, Sr40, Sr44, and Sr57 are of practical interest for advanced wheat breeding programs for stem rust immunity in Western Siberia. This review provides an analysis of the gene sources that remain effective against the West Siberian population of P. graminis, in order to facilitate the initial stage of selection of breeding material to develop a stable genotype by gene pyramiding. The basic requirements for conducting a phytopathological test of breeding material are presented. A list of molecular markers for the mentioned resistance genes, both widely used in marker-assisted selection and requiring verification, has been compiled.

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Use of Molecular Markers to Identify Certain Stem Rust Resistance Genes in Thirteen Bread Wheat Cultivars Registered in Egypt

Egyptian Journal of Phytopathology ◽

10.21608/ejp.2014.96766 ◽

2014 ◽

Vol 42 (1) ◽

pp. 193-203

Author(s):

Mostafa El-Shamy ◽

Ayman Omar

Keyword(s):

Molecular Markers ◽

Bread Wheat ◽

Resistance Genes ◽

Stem Rust ◽

Rust Resistance ◽

Stem Rust Resistance ◽

Wheat Cultivars ◽

Stem Rust Resistance Genes ◽

Rust Resistance Genes

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Sources of Stem Rust Resistance in Wheat-Alien Introgression Lines

Plant Disease ◽

10.1094/pdis-12-15-1448-re ◽

2016 ◽

Vol 100 (6) ◽

pp. 1101-1109 ◽

Cited By ~ 16

Author(s):

Mahbubjon Rahmatov ◽

Matthew N. Rouse ◽

Brian J. Steffenson ◽

Staffan C. Andersson ◽

Ruth Wanyera ◽

...

Keyword(s):

Molecular Markers ◽

Resistance Genes ◽

Stem Rust ◽

Rust Resistance ◽

Stem Rust Resistance ◽

Introgression Lines ◽

Resistance Pattern ◽

Sources Of Resistance ◽

Alien Introgression ◽

New Genes

Stem rust is one of the most devastating diseases of wheat. Widely virulent races of the pathogen in the Ug99 lineage (e.g., TTKSK) are threatening wheat production worldwide; therefore, there is an urgent need to enhance the diversity of resistance genes in the crop. The objectives of this study were to identify new sources of resistance in wheat-alien introgression derivatives from Secale cereale, Leymus mollis, L. racemosus, and Thinopyrum junceiforme, postulate genes conferring the resistance, and verify the postulated genes by use of molecular markers. From seedling tests conducted in the greenhouse, the presence of seven known stem rust resistance genes (Sr7b, Sr8a, Sr9d, Sr10, Sr31, Sr36, and SrSatu) was postulated in the wheat-alien introgression lines. More lines possessed a high level of resistance in the field compared with the number of lines that were resistant at the seedling stage. Three 2R (2D) wheat-rye substitution lines (SLU210, SLU238, and SLU239) seemed likely to possess new genes for resistance to stem rust based on their resistance pattern to 13 different stem rust races but the genes responsible could not be identified. Wheat-rye, wheat-L. racemosus, and wheat-L. mollis substitutions or translocations with single and multiple interchanges of chromosomes, in particular of the B and D chromosomes of wheat, were verified by a combination of genomic in situ hybridization and molecular markers. Thus, the present study identified novel resistance genes originating from different alien introgressions into the wheat genome of the evaluated lines. Such genes may prove useful in enhancing the diversity of stem rust resistance in wheat against widely virulent pathogen races such as those in the Ug99 lineage.

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Stem rust in Western Siberia – race composition and effective resistance genes

Vavilov Journal of Genetics and Breeding ◽

10.18699/vj20.608 ◽

2020 ◽

Vol 24 (2) ◽

pp. 131-138 ◽

Cited By ~ 4

Author(s):

V. P. Shamanin ◽

I. V. Pototskaya ◽

S. S. Shepelev ◽

V. E. Pozherukova ◽

E. A. Salina ◽

...

Keyword(s):

Bread Wheat ◽

Spring Wheat ◽

Resistance Genes ◽

Stem Rust ◽

Western Siberia ◽

Economic Damage ◽

Spring Bread Wheat ◽

Wheat Varieties ◽

Wheat Lines ◽

Sr Genes

Stem rust in recent years has acquired an epiphytotic character, causing significant economic damage for wheat production in some parts of Western Siberia. On the basis of a race composition study of the stem rust populations collected in 2016–2017 in Omsk region and Altai Krai, 13 pathotypes in Omsk population and 10 in Altai population were identified. The race differentiation of stem rust using a tester set of 20 North American Sr genes differentiator lines was carried out. The genes of stem rust pathotypes of the Omsk population are avirulent only to the resistance gene Sr31, Altai isolates are avirulent not only to Sr31, but also to Sr24, and Sr30. A low frequency of virulence (10–25 %) of the Omsk population pathotypes was found for Sr11, Sr24,Sr30, and for Altai population – Sr7b,Sr9b,Sr11,SrTmp, which are ineffective in Omsk region. Field evaluations of resistance to stem rust were made in 2016–2018 in Omsk region in the varieties and spring wheat lines from three different sources. The first set included 58 lines and spring bread wheat varieties with identified Sr genes – the so-called trap nursery (ISRTN – International Stem Rust Trap Nursery). The second set included spring wheat lines from the Arsenal collection, that were previously selected according to a complex of economically valuable traits, with genes for resistance to stem rust, including genes introgressed into the common wheat genome from wild cereal species. The third set included spring bread wheat varieties created in the Omsk State Agrarian University within the framework of a shuttle breeding program, with a synthetic wheat with the Ae. tauschiigenome in their pedigrees. It was established that the resistance genes Sr31, Sr40,Sr2 complexare effective against stem rust in the conditions of Western Siberia. The following sources with effective Srgenes were selected: (Benno)/6*LMPG-6 DK42, Seri 82, Cham 10, Bacanora (Sr31), RL 6087 Dyck (Sr40), Amigo (Sr24,1RS-Am), Siouxland (Sr24,Sr31), Roughrider (Sr6, Sr36), Sisson (Sr6,Sr31,Sr36), and Fleming (Sr6,Sr24,Sr36,1RS-Am), Pavon 76 (Sr2 complex) from the ISRTN nursery; No. 1 BC 1F2 (96 × 113) × 145 × 113 (Sr2,Sr36,Sr44), No. 14а F 3(96 × 113) × 145 (Sr36,Sr44), No. 19 BC 2F3(96 × 113) × 113 (Sr2, Sr36, Sr44), and No. 20 F 3 (96 × 113) × 145 (Sr2,Sr36,Sr40, Sr44) from the Arsenal collection; and the Omsk State Agrarian University varieties Element 22 (Sr31,Sr35), Lutescens 27-12, Lutescens 87-12 (Sr23,Sr36), Lutescens 70-13, and Lutescens 87-13 (Sr23,Sr31,Sr36). These sources are recommended for inclusion in the breeding process for developing stem rust resistant varieties in the region.

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Identification of the stem rust resistance genes in the introgression lines of spring bread wheat using molecular markers

10.18699/plantgen2019-019 ◽

2019 ◽

Keyword(s):

Molecular Markers ◽

Bread Wheat ◽

Resistance Genes ◽

Stem Rust ◽

Rust Resistance ◽

Stem Rust Resistance ◽

Introgression Lines ◽

Spring Bread Wheat ◽

Stem Rust Resistance Genes ◽

Rust Resistance Genes

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Identification of Winter Habit Bread Wheat Landraces in the National Small Grains Collection with Resistance to Emerging Stem Rust Pathogen Variants

Plant Disease ◽

10.1094/pdis-04-21-0743-re ◽

2021 ◽

Author(s):

Tyler Gordon ◽

Yue Jin ◽

Samuel Gale ◽

Matthew Rouse ◽

Samuel Stoxen ◽

...

Keyword(s):

Bread Wheat ◽

Resistance Genes ◽

Stem Rust ◽

Rust Resistance ◽

Stem Rust Resistance ◽

Field Nursery ◽

Small Grains ◽

Stem Rust Resistance Genes ◽

Landrace Accessions ◽

Rust Resistance Genes

Wheat stem rust caused by Puccinia graminis f. sp. tritici (Pgt) is a widespread and recurring threat to wheat production. Emerging Pgt variants are rapidly overcoming major gene resistance deployed in wheat cultivars and new sources of race-nonspecific resistance are urgently needed. The National Small Grains Collection (NSGC) contains thousands of wheat landrace accessions that may harbor unique and broadly effective sources of resistance to emerging Pgt variants. All NSGC available facultative and winter-habit bread wheat landraces were tested in a field nursery in St. Paul, MN against a bulk collection of six common U.S. Pgt races. Infection response and severity data were collected on 9,192 landrace accessions at the soft-dough stage and resistant accessions were derived from single spikes. Derived accessions were tested in St. Paul a second time to confirm resistance and in a field nursery in Njoro, Kenya against emerging races of Pgt with virulence to many known resistance genes including Sr24, Sr31, Sr38, and SrTmp. Accessions resistant in the St. Paul field were also tested at the seedling stage with up to 13 Pgt races, including TTKSK and TKTTF, and with 19 molecular markers linked with known stem rust resistance genes or genes associated with modern breeding practices. Forty-five accessions were resistant in both U.S. and Kenya field nurseries and lacked alleles linked with known stem rust resistance genes. Accessions with either moderate or strong resistance in the U.S. and Kenya field nurseries and with novel seedling resistance will be prioritized for further study.

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Identification of stem rust resistance genes in wheat cultivars in China using molecular markers

PeerJ ◽

10.7717/peerj.4882 ◽

2018 ◽

Vol 6 ◽

pp. e4882 ◽

Cited By ~ 7

Author(s):

Xiaofeng Xu ◽

Depeng Yuan ◽

Dandan Li ◽

Yue Gao ◽

Ziyuan Wang ◽

...

Keyword(s):

Molecular Markers ◽

Resistance Genes ◽

Stem Rust ◽

Rust Resistance ◽

Genetic Material ◽

Stem Rust Resistance ◽

Wheat Cultivars ◽

Wheat Stem Rust ◽

Stem Rust Resistance Genes ◽

Rust Resistance Genes

Wheat stem rust caused by Puccinia graminis f. sp. tritici Eriks. & E. Henn. (Pgt), is a major disease that has been effectively controlled using resistance genes. The appearance and spread of Pgt races such as Ug99, TKTTF, and TTTTF, which are virulent to most stem rust-resistant genes currently deployed in wheat breeding programs, renewed the interest in breeding cultivars resistant to wheat stem rust. It is therefore important to investigate the levels of resistance or vulnerability of wheat cultivars to Pgt races. Resistance to Pgt races 21C3CTHQM, 34MKGQM, and 34C3RTGQM was evaluated in 136 Chinese wheat cultivars at the seedling stage. A total of 124 cultivars (91.2%) were resistant to the three races. Resistance genes Sr2, Sr24, Sr25, Sr26, Sr31, and Sr38 were analyzed using molecular markers closely linked to them, and 63 of the 136 wheat cultivars carried at least one of these genes: 21, 25, and 28 wheat cultivars likely carried Sr2, Sr31, and Sr38, respectively. Cultivars “Kehan 3” and “Jimai 22” likely carried Sr25. None of the cultivars carried Sr24 or Sr26. These cultivars with known stem rust resistance genes provide valuable genetic material for breeding resistant wheat cultivars.

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