scholarly journals Electronic Health Record-Based Genome-Wide Meta-Analysis and Mendelian Randomization Identify Metabolic and Phenotypic Consequences of Non-Alcoholic Fatty Liver Disease

2020 ◽  
Author(s):  
Nooshin Ghodsian ◽  
Erik Abner ◽  
Émilie Gobeil ◽  
Nele Taba ◽  
Alexis St-Amand ◽  
...  

Abstract Non-alcoholic fatty liver disease (NAFLD) has been associated with several blood biomarkers and chronic diseases. Whether these associations underlie causal effects remains to be determined. We aimed at identifying blood metabolites, blood proteins and human diseases that are causally impacted by the presence of NAFLD using Mendelian randomization. We created a NAFLD genetic instrument from NAFLD loci (MTARC1, GCKR, LPL, TRIB1, LMO3, FTO, TM6SF2, APOE and PNPLA3) identified in a new electronic health record based-GWAS meta-analysis (6715 cases and 682,748 controls). We found a potentially causal effect of NAFLD on tyrosine metabolism as well as on blood levels of eight proteins that could potentially represent new early biomarkers of NAFLD. Using results from the UK Biobank, FinnGen and the COVID-19 Host Genetics Initiative, we found that NAFLD was not causally associated with diseases outside the spectrum of liver diseases, suggesting that the resolution of NAFLD might not prevent other diseases.

2017 ◽  
Vol 39 (5) ◽  
pp. 385-393 ◽  
Author(s):  
Bo Kobberø Lauridsen ◽  
Stefan Stender ◽  
Thomas Skårup Kristensen ◽  
Klaus Fuglsang Kofoed ◽  
Lars Køber ◽  
...  

2021 ◽  
Author(s):  
Nooshin Ghodsian ◽  
Erik Abner ◽  
Connor A. Emdin ◽  
Émilie Gobeil ◽  
Nele Taba ◽  
...  

Abstract Non-alcoholic fatty liver disease (NAFLD) is a complex disease linked with several chronic diseases. We aimed at identifying genetic variants associated with NAFLD as well as blood biomarkers that may be causally impacted by NAFLD. We performed a genome-wide meta-analysis of four cohorts of electronic health record-documented NAFLD (8434 cases and 770,180 controls) and confirmed known susceptibility loci (GCKR, MAU2/TM6SF2, APOE, and PNPLA3). We also identified potentially new loci (LPL, FTO and TR1B1) and report an effect of lower LPL expression in adipose tissue on NAFLD susceptibility. Mendelian randomization analyses identified an effect of NAFLD on tyrosine metabolism and on blood levels of three proteins. Positive genetic correlations between NAFLD and cardiometabolic traits and negative genetic correlations with parental lifespan, socio-economic factors and ketone bodies were observed. Altogether, this analysis revealed novel susceptibility loci for NAFLD and early biomarkers of NAFLD that could be used to identify patients with NAFLD.


2021 ◽  
Vol 10 (11) ◽  
pp. 2415
Author(s):  
Yasaman Vali ◽  
Jenny Lee ◽  
Jérôme Boursier ◽  
René Spijker ◽  
Joanne Verheij ◽  
...  

(1) Background: FibroTest™ is a multi-marker panel, suggested by guidelines as one of the surrogate markers with acceptable performance for detecting fibrosis in patients with non-alcoholic fatty liver disease (NAFLD). A number of studies evaluating this test have been published after publication of the guidelines. This study aims to produce summary estimates of FibroTest™ diagnostic accuracy. (2) Methods: Five databases were searched for studies that evaluated FibroTest™ against liver biopsy as the reference standard in NAFLD patients. Two authors independently screened the references, extracted data, and assessed the quality of included studies. Meta-analyses of the accuracy in detecting different levels of fibrosis were performed using the bivariate random-effects model and the linear mixed-effects multiple thresholds model. (3) Results: From ten included studies, seven were eligible for inclusion in our meta-analysis. Five studies were included in the meta-analysis of FibroTest™ in detecting advanced fibrosis and five in significant fibrosis, resulting in an AUC of 0.77 for both target conditions. The meta-analysis of three studies resulted in an AUC of 0.69 in detecting any fibrosis, while analysis of three other studies showed higher accuracy in cirrhosis (AUC: 0.92). (4) Conclusions: Our meta-analysis showed acceptable performance (AUC > 0.80) of FibroTest™ only in detecting cirrhosis. We observed more limited performance of the test in detecting significant and advanced fibrosis in NAFLD patients. Further primary studies with high methodological quality are required to validate the reliability of the test for detecting different fibrosis levels and to compare the performance of the test in different settings.


2017 ◽  
Vol 41 (5) ◽  
pp. 525-532 ◽  
Author(s):  
Karn Wijarnpreecha ◽  
Boonphiphop Boonpheng ◽  
Charat Thongprayoon ◽  
Veeravich Jaruvongvanich ◽  
Patompong Ungprasert

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