scholarly journals 1P044 Ligand-dissociation increases protein flexibility in trp RNA-binding attenuation protein (TRAP) : Molecular dynamics simulation study(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

2006 ◽  
Vol 46 (supplement2) ◽  
pp. S157
Author(s):  
Hidemi Araki ◽  
Sotaro Fuchigami ◽  
Mitsunori Ikeguchi ◽  
Jonathan G. Heddle ◽  
Jeremy R. H. Tame ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Protein Structure ◽  
Molecular Dynamics Simulation ◽  
Poster Session ◽  
Rna Binding ◽  
Dynamics Simulation ◽  
Ligand Dissociation ◽  
Structure And Dynamics ◽  
Meeting Program ◽  
Protein Structure And Dynamics

Molecular simulations reveal that the long range fluctuations of human DPP III change upon ligand binding

2015 ◽  
Vol 11 (11) ◽  
pp. 3068-3080 ◽  
Author(s):  
A. Tomić ◽  
M. Berynskyy ◽  
R. C. Wade ◽  
S. Tomić
Keyword(s):  
Molecular Dynamics ◽  
Protein Structure ◽  
Molecular Dynamics Simulation ◽  
Ligand Binding ◽  
Long Range ◽  
Dynamics Simulation ◽  
Structure And Dynamics ◽  
Simulation Techniques ◽  
Conformational Landscape ◽  
Protein Structure And Dynamics

A range of molecular dynamics simulation techniques were applied to investigate the DPP III conformational landscape and the influence of ligand binding on the protein structure and dynamics.

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