1P-092 Ligand-induced allosteric transition of adenylate kinase studied by chameleon Go model(The 46th Annual Meeting of the Biophysical Society of Japan)

Takahiro Yamashita; Syogo Yokota; Tomoki P. Terada

doi:10.2142/biophys.48.s35_4

1P-092 Ligand-induced allosteric transition of adenylate kinase studied by chameleon Go model(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s35_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S35

Author(s):

Takahiro Yamashita ◽

Syogo Yokota ◽

Tomoki P. Terada

Keyword(s):

Annual Meeting ◽

Adenylate Kinase ◽

Allosteric Transition ◽

Go Model ◽

Biophysical Society

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1P-093 Effect of local unfolding on the allosteric transition of adenylate kinase(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s35_5 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S35

Author(s):

Syogo Yokota ◽

Takahiro Yamashita ◽

Tomoki P. Terada

Keyword(s):

Annual Meeting ◽

Adenylate Kinase ◽

Allosteric Transition ◽

Biophysical Society ◽

Local Unfolding

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1PT127 Analysis of the influence of differences in native structures of a protein on its folding simulations with a Go model(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s90_2 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S90

Author(s):

Shuji Abe ◽

Masataka Sugita ◽

Takeshi Kikuchi

Keyword(s):

Annual Meeting ◽

Go Model ◽

Biophysical Society ◽

Folding Simulations

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2P070 Capturing large-scale conformational transitions of adenylate kinase using the string method(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s94_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S94

Author(s):

Yasuhiro Matsunaga ◽

Hiroshi Fujisaki ◽

Akinori Kidera

Keyword(s):

Annual Meeting ◽

Adenylate Kinase ◽

Large Scale ◽

Conformational Transitions ◽

String Method ◽

Biophysical Society

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3P-049 Theoretical study on the reaction mechanism of adenylate kinase by QM/MM method(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s135_1 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S135

Author(s):

Kenshu Kamiya

Keyword(s):

Reaction Mechanism ◽

Annual Meeting ◽

Adenylate Kinase ◽

Theoretical Study ◽

Biophysical Society

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3H1036 Analysis of the influence of differences between NMR and x-ray structure on folding mechanisms simulated by the coarse grained Go model(3H Protein: Property 4,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s133_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S133-S134

Author(s):

Masatake Sugita ◽

Syuji Abe ◽

Takeshi Kikuchi

Keyword(s):

Annual Meeting ◽

Coarse Grained ◽

X Ray ◽

Protein Property ◽

Go Model ◽

Biophysical Society

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2P036 A study of the allosteric transition of hemoglobin associated with oxygen binding using chameleon model(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s200_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S200

Author(s):

Yui Sobue ◽

Toru Kimura ◽

Masaki Sasai ◽

Tomoki P. Terada

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Oxygen Binding ◽

Allosteric Transition ◽

Biophysical Society

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2P021 Analyses of the folding mechanisms for the IgG binding domain related proteins based on a coarse grained Go model and ADM(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s85_4 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S85

Author(s):

Masatake Sugita ◽

Takeshi Kikuchi

Keyword(s):

Annual Meeting ◽

Binding Domain ◽

Coarse Grained ◽

Igg Binding ◽

Go Model ◽

Biophysical Society ◽

Related Proteins

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3P082 Computational study on the reaction mechanism of adenylate kinase(Protein: Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s159_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S159

Author(s):

Kenshu Kamiya

Keyword(s):

Reaction Mechanism ◽

Annual Meeting ◽

Protein Function ◽

Adenylate Kinase ◽

Computational Study ◽

Biophysical Society

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3P-019 Protein folding simulation based on the Go model and comparison with the predictions of folding mechanism based on the interresidue average distance statistics(Protein:Structure,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s154_1 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S154

Author(s):

Masatake Sugita ◽

Takeshi Kikuchi

Keyword(s):

Protein Folding ◽

Annual Meeting ◽

Average Distance ◽

Folding Mechanism ◽

Folding Simulation ◽

Simulation Based ◽

Go Model ◽

Biophysical Society

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2P068 Computational Study on the reaction mechanism of adenylate kinase(01D. Protein: Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s206_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S206

Author(s):

Kenshu Kamiya

Keyword(s):

Reaction Mechanism ◽

Annual Meeting ◽

Protein Function ◽

Adenylate Kinase ◽

Computational Study ◽

Biophysical Society

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