2P-082 Nonlinear Relaxation Phenomena in Coarse-grained Molecular Dynamics and Characterization of Motion in Bio-molecular Machines(The 46th Annual Meeting of the Biophysical Society of Japan)

2SCP-05 Protein-ligand binding processes studied by coarse-grained molecular dynamics simulations(Prediction and analysis of protein functions from structural bioinformatics,Symposium,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s133_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S133

Author(s):

Tohru Terada ◽

Tatsuki Negami ◽

Kentaro Shimizu

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Structural Bioinformatics ◽

Coarse Grained ◽

Biophysical Society ◽

Protein Functions ◽

Dynamics Simulations ◽

2PT135 Coarse-grained molecular dynamics study of ligand-dependent reaction activity of PPAR_γ(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s128_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S128

Author(s):

Akinori Awazu

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Coarse Grained ◽

Biophysical Society ◽

3P124 Proton pathway and rotary motion of c-ring in F_o analyzed by all-atom and coarse-grained molecular dynamics simulation.(Membrane proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s166_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S166-S167

Author(s):

Kentaro Fukunaga ◽

Takato Sato ◽

Kyohei Yamamoto ◽

Jun Narita ◽

Mitsunori Takano

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Dynamics Simulation ◽

Coarse Grained ◽

Rotary Motion ◽

Biophysical Society ◽

2P051 Quantifying how actin filament is stretched, twisted and bent : A coarse grained molecular dynamics simulation study(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s203_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S203

Author(s):

Shinji Matsushita ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Actin Filament ◽

Simulation Study ◽

Dynamics Simulation ◽

Coarse Grained ◽

Protein Property ◽

Biophysical Society ◽

2P138 Dynamical Behavior of Ribosomes in Translation Process by Coarse-Grained Molecular Dynamics Simulation(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s106_4 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S106

Author(s):

Shigenori Matsumoto ◽

Fumiko Takagi ◽

Takashi Shimada ◽

Nobuyasu Ito

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Dynamical Behavior ◽

Dynamics Simulation ◽

Coarse Grained ◽

Translation Process ◽

Biophysical Society ◽

3PT107 RNA 3D structure prediction by using coarse-grained molecular dynamics simulation(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s158_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S158

Author(s):

Tomoshi Kameda

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Structure Prediction ◽

3D Structure ◽

Dynamics Simulation ◽

Coarse Grained ◽

Biophysical Society ◽

3D Structure Prediction ◽

1P-033 Does a non-mechanosensitive ion channel really not open by mechanical force? : A coarse grained molecular dynamics simulation study(Protein:Structure & Function, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s68_4 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S68

Author(s):

Ken Takahashi ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Ion Channel ◽

Annual Meeting ◽

Simulation Study ◽

Mechanical Force ◽

Dynamics Simulation ◽

Coarse Grained ◽

Biophysical Society ◽

Mechanosensitive Ion Channel

Characterization of Potent Antimicrobial Lipopeptide via All-Atom and Coarse-Grained Molecular Dynamics

Biophysical Journal ◽

10.1016/j.bpj.2010.12.2913 ◽

2011 ◽

Vol 100 (3) ◽

pp. 497a

Author(s):

Joshua N. Horn ◽

Jesse Sengillo ◽

Alan Grossfield

Keyword(s):

Molecular Dynamics ◽

Coarse Grained ◽

Antimicrobial Lipopeptide ◽

Characterization of a potent antimicrobial lipopeptide via coarse-grained molecular dynamics

Biochimica et Biophysica Acta (BBA) - Biomembranes ◽

10.1016/j.bbamem.2011.07.025 ◽

2012 ◽

Vol 1818 (2) ◽

pp. 212-218 ◽

Cited By ~ 34

Author(s):

Joshua N. Horn ◽

Jesse D. Sengillo ◽

Dejun Lin ◽

Tod D. Romo ◽

Alan Grossfield

Keyword(s):

Molecular Dynamics ◽

Coarse Grained ◽

Antimicrobial Lipopeptide ◽

1TP3-05 Characterization of monomeric polyglutamine peptides by replica exchange molecular dynamics simulation(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s34_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S34-S35

Author(s):

Miki Nakano ◽

Hirofumi Watanabe ◽

Shigenori Tanaka

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Dynamics Simulation ◽

Replica Exchange ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society