2PT135 Coarse-grained molecular dynamics study of ligand-dependent reaction activity of PPAR_γ(The 50th Annual Meeting of the Biophysical Society of Japan)

2SCP-05 Protein-ligand binding processes studied by coarse-grained molecular dynamics simulations(Prediction and analysis of protein functions from structural bioinformatics,Symposium,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s133_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S133

Author(s):

Tohru Terada ◽

Tatsuki Negami ◽

Kentaro Shimizu

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Structural Bioinformatics ◽

Coarse Grained ◽

Biophysical Society ◽

Protein Functions ◽

Dynamics Simulations ◽

3P124 Proton pathway and rotary motion of c-ring in F_o analyzed by all-atom and coarse-grained molecular dynamics simulation.(Membrane proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s166_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S166-S167

Author(s):

Kentaro Fukunaga ◽

Takato Sato ◽

Kyohei Yamamoto ◽

Jun Narita ◽

Mitsunori Takano

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Dynamics Simulation ◽

Coarse Grained ◽

Rotary Motion ◽

Biophysical Society ◽

2P-082 Nonlinear Relaxation Phenomena in Coarse-grained Molecular Dynamics and Characterization of Motion in Bio-molecular Machines(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s87_6 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S87

Author(s):

Yuichi Togashi ◽

Masahiro Ueda ◽

Alexander S. Mikhailov ◽

Toshio Yanagida

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Molecular Machines ◽

Coarse Grained ◽

Relaxation Phenomena ◽

Nonlinear Relaxation ◽

Biophysical Society ◽

2P051 Quantifying how actin filament is stretched, twisted and bent : A coarse grained molecular dynamics simulation study(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s203_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S203

Author(s):

Shinji Matsushita ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Actin Filament ◽

Simulation Study ◽

Dynamics Simulation ◽

Coarse Grained ◽

Protein Property ◽

Biophysical Society ◽

2P138 Dynamical Behavior of Ribosomes in Translation Process by Coarse-Grained Molecular Dynamics Simulation(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s106_4 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S106

Author(s):

Shigenori Matsumoto ◽

Fumiko Takagi ◽

Takashi Shimada ◽

Nobuyasu Ito

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Dynamical Behavior ◽

Dynamics Simulation ◽

Coarse Grained ◽

Translation Process ◽

Biophysical Society ◽

3PT107 RNA 3D structure prediction by using coarse-grained molecular dynamics simulation(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s158_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S158

Author(s):

Tomoshi Kameda

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Structure Prediction ◽

3D Structure ◽

Dynamics Simulation ◽

Coarse Grained ◽

Biophysical Society ◽

3D Structure Prediction ◽

1P-033 Does a non-mechanosensitive ion channel really not open by mechanical force? : A coarse grained molecular dynamics simulation study(Protein:Structure & Function, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s68_4 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S68

Author(s):

Ken Takahashi ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Ion Channel ◽

Annual Meeting ◽

Simulation Study ◽

Mechanical Force ◽

Dynamics Simulation ◽

Coarse Grained ◽

Biophysical Society ◽

Mechanosensitive Ion Channel

1SD-02 The mechanism of nuclear protein searching on DNA : Coarse-Grained simulation study(1SD Molecular Dynamics in the Nucleus and Gene Regulation,Symposium,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s4_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S4

Author(s):

Tsuyoshi Terakawa

Keyword(s):

Molecular Dynamics ◽

Gene Regulation ◽

Annual Meeting ◽

Simulation Study ◽

Nuclear Protein ◽

Coarse Grained ◽

Biophysical Society

3PT006 Transcription factor p53 searching dynamics on nucleosomal DNA: Coarse-grained molecular dynamics simulation study(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s156_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S156

Author(s):

Tsuyoshi Terakawa ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Transcription Factor ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

Coarse Grained ◽

Nucleosomal Dna ◽

Biophysical Society ◽

Transcription Factor P53

1TA1-06 Does a non-mechanosensitive ion channel really not open by mechanical force? : A coarse grained molecular dynamics simulation study(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s25_3 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S25

Author(s):

Ken Takahashi ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Ion Channel ◽

Annual Meeting ◽

Simulation Study ◽

Mechanical Force ◽

Dynamics Simulation ◽

Coarse Grained ◽

Biophysical Society ◽

Mechanosensitive Ion Channel