3P044 The development of multi-dimensional replica-exchange molecular dynamics program (REIN)(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

3P077 Refinement of Modeled Protein Structure by Replica Exchange Molecular Dynamics and Hydration Entropy based Scoring Function(Protein: Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s158_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S158

Author(s):

Shiqiao Du ◽

Yuichi Harano ◽

Minoru Sakurai ◽

Masahiro Kinoshita

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Annual Meeting ◽

Scoring Function ◽

Replica Exchange ◽

Protein Property ◽

3D0936 Prediction of dynamical conformation of biantennary complex-type N-glycan in water by replica-exchange molecular dynamics simulations(3D Protein: Structure & Function 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s117_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S117

Author(s):

Suyong Re ◽

Naoyuki Miyashita ◽

Yoshiki Yamaguchi ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Replica Exchange ◽

Complex Type ◽

3D Protein Structure ◽

Biophysical Society ◽

3P314 Conformational analysis of PA-glycans by replica-exchange molecular dynamics simulations(30.Miscellaneous topics,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s264_1 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S264

Author(s):

Shigehisa Watanabe ◽

Suyong Re ◽

Eiro Muneyuki ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Conformational Analysis ◽

Annual Meeting ◽

Replica Exchange ◽

Biophysical Society ◽

2P037 Molecular dynamics study on dynamics of allosteric conformational change of Catabolite activator protein induced by cAMP binding(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s201_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S201

Author(s):

Mayuka Ojima ◽

Yoshifumi Fukunishi ◽

Masami Lintuluoto

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Conformational Change ◽

Catabolite Activator Protein ◽

Activator Protein ◽

1P042 Replica-exchange simulation of N-ter fragment in HP1 chromodomain and model construction of HP1αCD/histone H3 tail complex(01B. Protein : Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s147_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S147

Author(s):

Satoshi Omori ◽

Nobuto Hashiguchi ◽

Kei Moritsugu ◽

Yoshifumi Nishimura ◽

Akinori Kidera

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Histone H3 ◽

Model Construction ◽

Replica Exchange ◽

1TP3-05 Characterization of monomeric polyglutamine peptides by replica exchange molecular dynamics simulation(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s34_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S34-S35

Author(s):

Miki Nakano ◽

Hirofumi Watanabe ◽

Shigenori Tanaka

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Dynamics Simulation ◽

Replica Exchange ◽

3P034 Replica exchange MD and ab initio fragment MO calculations for searching stable conformations of amyloid-b dimer in water(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s254_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S254

Author(s):

Hiromi Ishimura ◽

Akisumi Okamoto ◽

Atsushi Yano ◽

Noriyuki Kurita

Keyword(s):

Protein Structure ◽

Structure Function ◽

Ab Initio ◽

Annual Meeting ◽

Replica Exchange ◽

Mo Calculations ◽

3PT157 Surface tension replica exchange molecular dynamics method for an efficient sampling of lipid bilayer structures(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s168_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S168

Author(s):

Takaharu Mori ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Surface Tension ◽

Annual Meeting ◽

Lipid Bilayer ◽

Molecular Dynamics Method ◽

Replica Exchange ◽

Efficient Sampling ◽

Biophysical Society ◽

Dynamics Method

2P-172 Replica-exchange molecular dynamics simulations of membrane systems(Biol & Artifi memb.:Structure & Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s133_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S133

Author(s):

Tetsuro Nagai ◽

Yuko Okamoto

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Replica Exchange ◽

Structure Property ◽

Membrane Systems ◽

Biophysical Society ◽

3P042 Applications of the Hamiltonian replica-permutation molecular dynamics simulations to Aβ fragments(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s255_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S255

Author(s):

Satoru G. Itoh ◽

OkumuraHisashi

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Biophysical Society ◽