2P037 Molecular dynamics study on dynamics of allosteric conformational change of Catabolite activator protein induced by cAMP binding(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Mayuka Ojima; Yoshifumi Fukunishi; Masami Lintuluoto

doi:10.2142/biophys.54.s201_1

2P037 Molecular dynamics study on dynamics of allosteric conformational change of Catabolite activator protein induced by cAMP binding(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s201_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S201

Author(s):

Mayuka Ojima ◽

Yoshifumi Fukunishi ◽

Masami Lintuluoto

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Conformational Change ◽

Catabolite Activator Protein ◽

Activator Protein ◽

Biophysical Society

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3P044 The development of multi-dimensional replica-exchange molecular dynamics program (REIN)(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s152_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S152-S153

Author(s):

Naoyuki Miyashita ◽

Mitsunori Ikeguchi ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Replica Exchange ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society

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3P042 Applications of the Hamiltonian replica-permutation molecular dynamics simulations to Aβ fragments(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s255_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S255

Author(s):

Satoru G. Itoh ◽

OkumuraHisashi

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Biophysical Society ◽

Dynamics Simulations

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3P043 Relaxation Mode Analysis of a protein using a Molecular Dynamics Simulation(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s152_4 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S152

Author(s):

Toshiki Nagai ◽

Ayori Mitsutake ◽

Hiroshi Takano

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulation ◽

Structure Function ◽

Annual Meeting ◽

Dynamics Simulation ◽

Mode Analysis ◽

Relaxation Mode ◽

Biophysical Society

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2D1512 BISPHENOL A-INDUCED CONFORMATIONAL CHANGE OF PROTEIN DISULFIDE ISOMERASE(Protein: Structure & Function 1,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s80_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S80

Author(s):

Masaki Okumura ◽

Marina Nawata ◽

Shoko Hashimoto ◽

Tomohisa Shibano ◽

Kohei Shiba ◽

...

Keyword(s):

Protein Structure ◽

Bisphenol A ◽

Structure Function ◽

Annual Meeting ◽

Conformational Change ◽

Protein Disulfide Isomerase ◽

Disulfide Isomerase ◽

Biophysical Society ◽

Protein Disulfide

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3D1136 Molecular dynamics simulation study of diubiquitins : Analysis of ubiquitin-ubiquitin interactions(3D Protein: Structure & Function 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s118_6 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S118-S119

Author(s):

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulation ◽

Structure Function ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

3D Protein Structure ◽

Biophysical Society

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3P031 Molecular dynamics study of the interaction between xanthine oxidoreductase and the inhibitor(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s150_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S150

Author(s):

Hiroto Kikuchi ◽

Hiroshi Fujisaki ◽

Tadaomi Furuta ◽

Ken Okamoto ◽

Silke Leimkuhler ◽

...

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Xanthine Oxidoreductase ◽

Inhibitor Protein ◽

Biophysical Society

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2P044 Conformational states of HAMP domains interacting with SRII-membrane systems: A molecular dynamics approach(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s202_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S202

Author(s):

Bikash Sahoo ◽

Toshimichi Fujiwara

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Membrane Systems ◽

Conformational States ◽

Biophysical Society

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2P034 High-speed AFM observation of structure and function of MukB(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s200_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S200

Author(s):

Kenta Yagi ◽

Koichi Yano ◽

Noriyuki Kodera ◽

Hironori Niki ◽

Toshio Ando

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

High Speed ◽

Structure And Function ◽

Biophysical Society ◽

And Function ◽

Afm Observation

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1P029 The role of weak interaction in a blue copper protein, plastocyanin from Ulva pertusa(Protein: Structure & Function,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s145_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S145

Author(s):

Ikeda Soichiro ◽

Takashina Akiko ◽

Yamaguchi Takahide ◽

Aoki Risa ◽

Unno Masaki ◽

...

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Weak Interaction ◽

Ulva Pertusa ◽

Blue Copper Protein ◽

Blue Copper ◽

Copper Protein ◽

Biophysical Society

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3P047 Building an Artificial Protein Capsid(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s256_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S256

Author(s):

Jonathan Heddle

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Biophysical Society ◽

Artificial Protein

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