3P077 Refinement of Modeled Protein Structure by Replica Exchange Molecular Dynamics and Hydration Entropy based Scoring Function(Protein: Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Protein Property ◽

3P044 The development of multi-dimensional replica-exchange molecular dynamics program (REIN)(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s152_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S152-S153

Author(s):

Naoyuki Miyashita ◽

Mitsunori Ikeguchi ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Replica Exchange ◽

3P314 Conformational analysis of PA-glycans by replica-exchange molecular dynamics simulations(30.Miscellaneous topics,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s264_1 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S264

Author(s):

Shigehisa Watanabe ◽

Suyong Re ◽

Eiro Muneyuki ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Conformational Analysis ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Replica Exchange ◽

Biophysical Society ◽

Dynamics Simulations

3D0936 Prediction of dynamical conformation of biantennary complex-type N-glycan in water by replica-exchange molecular dynamics simulations(3D Protein: Structure & Function 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s117_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S117

Author(s):

Suyong Re ◽

Naoyuki Miyashita ◽

Yoshiki Yamaguchi ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Molecular Dynamics Simulations ◽

Replica Exchange ◽

Complex Type ◽

3D Protein Structure ◽

Biophysical Society ◽

Dynamics Simulations

1TP3-05 Characterization of monomeric polyglutamine peptides by replica exchange molecular dynamics simulation(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s34_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S34-S35

Author(s):

Miki Nakano ◽

Hirofumi Watanabe ◽

Shigenori Tanaka

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Dynamics Simulation ◽

Replica Exchange ◽

3PT157 Surface tension replica exchange molecular dynamics method for an efficient sampling of lipid bilayer structures(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s168_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S168

Author(s):

Takaharu Mori ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Surface Tension ◽

Annual Meeting ◽

Lipid Bilayer ◽

Molecular Dynamics Method ◽

Replica Exchange ◽

Efficient Sampling ◽

Biophysical Society ◽

Dynamics Method

2P-172 Replica-exchange molecular dynamics simulations of membrane systems(Biol & Artifi memb.:Structure & Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s133_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S133

Author(s):

Tetsuro Nagai ◽

Yuko Okamoto

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Replica Exchange ◽

Structure Property ◽

Membrane Systems ◽

Biophysical Society ◽

Dynamics Simulations

1P-055 Characterization of monomeric polyglutamine peptides by replica exchange molecular dynamics simulation(Protein:Property, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s71_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S71-S72

Author(s):

Miki Nakano ◽

Hirofumi Watanabe ◽

Shigenori Tanaka

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Dynamics Simulation ◽

Replica Exchange ◽

1P321 Mass-scaling replica-exchange molecular dynamics method(30. Miscellaneous topics,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s194_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S194

Author(s):

Tetsuro Nagai ◽

Takuya Takahashi

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Molecular Dynamics Method ◽

Replica Exchange ◽

Mass Scaling ◽

Biophysical Society ◽

Dynamics Method

1PT131 Development and application of the helix-strand replica-exchange molecular dynamics method(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s91_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S91

Author(s):

Hisashi Okumura ◽

Satoru G. Itoh

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Molecular Dynamics Method ◽

Replica Exchange ◽

Biophysical Society ◽

Dynamics Method

1P061 High-pressure molecular dynamics study on the thermodynamics and structures of helical peptides(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s151_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S151

Author(s):

Yoshiharu Mori ◽

Hisashi Okumura

Keyword(s):

Molecular Dynamics ◽

High Pressure ◽

Annual Meeting ◽

Helical Peptides ◽

Protein Property ◽