3P034 Replica exchange MD and ab initio fragment MO calculations for searching stable conformations of amyloid-b dimer in water(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Hiromi Ishimura; Akisumi Okamoto; Atsushi Yano; Noriyuki Kurita

doi:10.2142/biophys.54.s254_4

3P034 Replica exchange MD and ab initio fragment MO calculations for searching stable conformations of amyloid-b dimer in water(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s254_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S254

Author(s):

Hiromi Ishimura ◽

Akisumi Okamoto ◽

Atsushi Yano ◽

Noriyuki Kurita

Keyword(s):

Protein Structure ◽

Structure Function ◽

Ab Initio ◽

Annual Meeting ◽

Replica Exchange ◽

Mo Calculations ◽

Biophysical Society

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1P026 MD and ab initio MO simulations on transcriptional mechanism controlled by lactose repressor protein and ligand(Protein: Structure & Function,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s145_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S145

Author(s):

Matsushita Yuki ◽

Shimamura Kanako ◽

Oishi Masato ◽

Ohyama Tatsuya ◽

Kurita Noriyuki

Keyword(s):

Protein Structure ◽

Structure Function ◽

Ab Initio ◽

Annual Meeting ◽

Repressor Protein ◽

Lactose Repressor ◽

Biophysical Society ◽

Ab Initio Mo

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2P029 Ab initio fragment molecular orbital calculations on specific interactions between butylcholinesterase and its inhibitors(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s199_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S199

Author(s):

Takeru Murakawa ◽

Tomoya Suzuki ◽

Tareq Khan ◽

Noriyuki Kurita

Keyword(s):

Protein Structure ◽

Structure Function ◽

Ab Initio ◽

Annual Meeting ◽

Molecular Orbital ◽

Molecular Orbital Calculations ◽

Specific Interactions ◽

Fragment Molecular Orbital ◽

Biophysical Society

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1P042 Replica-exchange simulation of N-ter fragment in HP1 chromodomain and model construction of HP1αCD/histone H3 tail complex(01B. Protein : Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s147_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S147

Author(s):

Satoshi Omori ◽

Nobuto Hashiguchi ◽

Kei Moritsugu ◽

Yoshifumi Nishimura ◽

Akinori Kidera

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Histone H3 ◽

Model Construction ◽

Replica Exchange ◽

Biophysical Society

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3P044 The development of multi-dimensional replica-exchange molecular dynamics program (REIN)(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s152_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S152-S153

Author(s):

Naoyuki Miyashita ◽

Mitsunori Ikeguchi ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Replica Exchange ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society

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2P030 Ab initio molecular simulation for proposing novel peptide inhibitors blocking the ligand-binding to the receptor of cancer cell(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s199_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S199

Author(s):

Tatsuro Mizushima ◽

Ryushi Kadoya ◽

Tomoyo Kasumi ◽

Hiroshi Kobayashi ◽

Noriyuki Kurita

Keyword(s):

Protein Structure ◽

Ligand Binding ◽

Structure Function ◽

Ab Initio ◽

Annual Meeting ◽

Molecular Simulation ◽

Cancer Cell ◽

Peptide Inhibitors ◽

Biophysical Society

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2P034 High-speed AFM observation of structure and function of MukB(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s200_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S200

Author(s):

Kenta Yagi ◽

Koichi Yano ◽

Noriyuki Kodera ◽

Hironori Niki ◽

Toshio Ando

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

High Speed ◽

Structure And Function ◽

Biophysical Society ◽

And Function ◽

Afm Observation

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1P029 The role of weak interaction in a blue copper protein, plastocyanin from Ulva pertusa(Protein: Structure & Function,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s145_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S145

Author(s):

Ikeda Soichiro ◽

Takashina Akiko ◽

Yamaguchi Takahide ◽

Aoki Risa ◽

Unno Masaki ◽

...

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Weak Interaction ◽

Ulva Pertusa ◽

Blue Copper Protein ◽

Blue Copper ◽

Copper Protein ◽

Biophysical Society

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3P047 Building an Artificial Protein Capsid(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s256_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S256

Author(s):

Jonathan Heddle

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Biophysical Society ◽

Artificial Protein

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2P025 Structural insight into the heme-transfer mechanism between Isd proteins in Staphylococcus aureus(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s199_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S199

Author(s):

Yoshitaka Moriwaki ◽

Tohru Terada ◽

Jose M. M. Caaveiro ◽

Kouhei Tsumoto ◽

Kentaro Shimizu

Keyword(s):

Staphylococcus Aureus ◽

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Transfer Mechanism ◽

Biophysical Society ◽

Heme Transfer ◽

Structural Insight ◽

Insight Into

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3P042 Atomic-level observation of how ATP-binding influences the structural and solvation state of myosin(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s152_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S152

Author(s):

Takato Sato ◽

Jun Ohnuki ◽

Kei-ichi Okazaki ◽

Mitsunori Takano

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Atomic Level ◽

Atp Binding ◽

Solvation State ◽

Biophysical Society

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