1P061 High-pressure molecular dynamics study on the thermodynamics and structures of helical peptides(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Yoshiharu Mori; Hisashi Okumura

doi:10.2142/biophys.54.s151_1

1P061 High-pressure molecular dynamics study on the thermodynamics and structures of helical peptides(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s151_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S151

Author(s):

Yoshiharu Mori ◽

Hisashi Okumura

Keyword(s):

Molecular Dynamics ◽

High Pressure ◽

Annual Meeting ◽

Helical Peptides ◽

Protein Property ◽

Biophysical Society

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3P077 Refinement of Modeled Protein Structure by Replica Exchange Molecular Dynamics and Hydration Entropy based Scoring Function(Protein: Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s158_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S158

Author(s):

Shiqiao Du ◽

Yuichi Harano ◽

Minoru Sakurai ◽

Masahiro Kinoshita

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Annual Meeting ◽

Scoring Function ◽

Replica Exchange ◽

Replica Exchange Molecular Dynamics ◽

Protein Property ◽

Biophysical Society

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1H1336 Conformations of ubiquitin at high pressure studied by isobaric-isothermal simulated tempering simulations(Protein: Property 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s48_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S48-S49

Author(s):

Yoshiharu Mori ◽

Yuko Okamoto

Keyword(s):

High Pressure ◽

Annual Meeting ◽

Protein Property ◽

Biophysical Society ◽

Simulated Tempering

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3P058 Dynamics and Interactions of Macromolecules in the Bacterial Cytoplasm : All-atom Molecular Dynamics Study(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s258_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S258

Author(s):

Isseki Yu ◽

Tadashi Ando ◽

Takaharu Mori ◽

Jaewoon Jung ◽

Ryuhei Harada ◽

...

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Protein Property ◽

Biophysical Society ◽

Bacterial Cytoplasm

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1P054 Analysis of water dynamics at the surfaces of antibodies : Molecular dynamics study(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s149_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S149

Author(s):

Keiko Shinoda ◽

Hideaki Fujitani

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Water Dynamics ◽

Protein Property ◽

Biophysical Society

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2P017 Structure Change Analysis of Deep-sea Fish α-Actin at High Pressure by Molecular Dynamics Simulations(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s84_6 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S84-S85

Author(s):

Nobuhiko Wakai ◽

Kazuyuki Takemura ◽

Takami Morita ◽

Akio Kitao

Keyword(s):

Molecular Dynamics ◽

High Pressure ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Deep Sea ◽

Structure Change ◽

Change Analysis ◽

Biophysical Society ◽

Dynamics Simulations ◽

Sea Fish

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3P075 Pressure dependence of protein conformations studied by generalized simulated tempering molecular dynamics simulations(Protein: Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s158_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S158

Author(s):

Yoshiharu Mori ◽

Yuko Okamoto

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Pressure Dependence ◽

Protein Conformations ◽

Protein Property ◽

Biophysical Society ◽

Simulated Tempering ◽

Dynamics Simulations

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3P053 Dehydration in cytochrome c folding revealed by high pressure spectroscopy(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s257_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S257

Author(s):

Shohei Konno ◽

Kentaro Doi ◽

Takeshi Uchida ◽

Koichiro Ishimori

Keyword(s):

High Pressure ◽

Cytochrome C ◽

Annual Meeting ◽

Protein Property ◽

Biophysical Society

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1H1348 Cavity hydration as a gateway to internal mobility : A high pressure ^C and ^N-NMR study of T4 lysozyme(Protein: Property 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s49_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S49

Author(s):

Akihiro Maeno ◽

Ryo Kitahara ◽

Frederick Dahlquist ◽

Shigeyuki Yokoyama ◽

Frans Mulder ◽

...

Keyword(s):

High Pressure ◽

Annual Meeting ◽

T4 Lysozyme ◽

Nmr Study ◽

Protein Property ◽

Biophysical Society ◽

Internal Mobility

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1P050 Secondary Structure Principal Component Analysis of Protein Molecular Dynamics Simulations(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s149_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S149

Author(s):

Norifumi Yamamoto

Keyword(s):

Molecular Dynamics ◽

Principal Component Analysis ◽

Secondary Structure ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Principal Component ◽

Protein Property ◽

Biophysical Society ◽

Dynamics Simulations ◽

Protein Molecular Dynamics

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1H1324 Temperature and pressure denaturation of chignolin by multibaric-multithermal molecular dynamics method(Protein: Property 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s48_4 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S48

Author(s):

Hisashi Okumura

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Molecular Dynamics Method ◽

Protein Property ◽

Biophysical Society ◽

Temperature And Pressure ◽

Dynamics Method

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