1E1536 Representative Interaction FingerPrint from decoys generated by rigid-body protein-protein docking(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Nobuyuki Uchikoga; Yuri Matsuzaki; Masahito Ohue; Takatsugu Hirokawa; Yutaka Akiyama

doi:10.2142/biophys.51.s41_2

1E1536 Representative Interaction FingerPrint from decoys generated by rigid-body protein-protein docking(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s41_2 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S41

Author(s):

Nobuyuki Uchikoga ◽

Yuri Matsuzaki ◽

Masahito Ohue ◽

Takatsugu Hirokawa ◽

Yutaka Akiyama

Keyword(s):

Rigid Body ◽

Annual Meeting ◽

Protein Docking ◽

Genome Biology ◽

Body Protein ◽

Biophysical Society

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1E1636 PSCDB : a database for protein structural change upon ligand binding(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s42_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S42

Author(s):

Takayuki Amemiya ◽

Ryotaro Koike ◽

Akinori Kidera ◽

Motonori Ota

Keyword(s):

Structural Change ◽

Ligand Binding ◽

Annual Meeting ◽

Genome Biology ◽

Biophysical Society

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1E1524 Development of a scoring function for domain-domain docking to predict multi-domain protein structures(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s41_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S41

Author(s):

Satoru Hirako ◽

Masafumi Shionyu

Keyword(s):

Annual Meeting ◽

Protein Structures ◽

Scoring Function ◽

Genome Biology ◽

Biophysical Society ◽

Domain Protein ◽

Domain Docking

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Effect of local shape modifications of molecular surfaces on rigid-body protein–protein docking

Protein Engineering Design and Selection ◽

10.1093/proeng/gzg021 ◽

2003 ◽

Vol 16 (3) ◽

pp. 179-185 ◽

Cited By ~ 39

Author(s):

A. Heifetz ◽

M. Eisenstein

Keyword(s):

Rigid Body ◽

Protein Docking ◽

Body Protein ◽

Local Shape ◽

Molecular Surfaces

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1E1448 Development of a novel protein structure predicion method emphasizing non-local interaction(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s40_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S40

Author(s):

Kota Nakamori ◽

Shintaro Minami ◽

Kengo Sawada ◽

George Chikenji

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Genome Biology ◽

Local Interaction ◽

Biophysical Society ◽

Non Local ◽

Novel Protein

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3P291 Development of an "ab initio" identification system of transcriptional factor binding motifs in genome DNA sequences(Genome biology: Genome analysis,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s196_6 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S196-S197

Author(s):

Ryoh Nakaki ◽

Masaru Tateno

Keyword(s):

Ab Initio ◽

Annual Meeting ◽

Dna Sequences ◽

Genome Analysis ◽

Transcriptional Factor ◽

Genome Biology ◽

Identification System ◽

Binding Motifs ◽

Factor Binding ◽

Biophysical Society

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2P-284 Protein-protein docking with protein flexibility from bioinformatic approach(Invited Talk for Early Research in Biophysics Award,Early Research in Biophysics Award)(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s119_1 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S119

Author(s):

Nobuyuki Uchikoga ◽

Takatsugu Hirokawa

Keyword(s):

Annual Meeting ◽

Protein Flexibility ◽

Protein Docking ◽

Early Research ◽

Biophysical Society ◽

Bioinformatic Approach

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1E1548 SCPC : A method to structurally compare protein complexes(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s41_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S41

Author(s):

Ryotaro Koike ◽

Motonori Ota

Keyword(s):

Annual Meeting ◽

Protein Complexes ◽

Genome Biology ◽

Biophysical Society

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1E1348 An estimation of the number of new folds in the human proteome(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s40_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S40

Author(s):

Satoshi Fukuchi ◽

Keiichi Homma ◽

Ken Nishikawa

Keyword(s):

Annual Meeting ◽

Genome Biology ◽

Human Proteome ◽

Biophysical Society

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3G1148 P15 Solvation Free Energy of Complex : a potential tool for improving scoring function in protein-protein docking(3G Protein: Structure 3,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s130_4 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S130

Author(s):

Kazuhiro Takemura ◽

Hao Guo ◽

Shun Sakuraba ◽

Nobuyuki Matubayashi ◽

Akio Kitao

Keyword(s):

Free Energy ◽

Protein Structure ◽

Annual Meeting ◽

Scoring Function ◽

Solvation Free Energy ◽

Protein Docking ◽

Biophysical Society ◽

Potential Tool

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1P-031 Novel scheme for protein docking based on informatical complete search of intermolectular hydrogen bond networks(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s25_5 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S25

Author(s):

Hiroaki Fukunishi ◽

Tazushi Kkitta ◽

Masaru Tateno

Keyword(s):

Hydrogen Bond ◽

Annual Meeting ◽

Protein Docking ◽

Hydrogen Bond Networks ◽

Complete Search ◽

Biophysical Society

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