Mathematical Structural Descriptors of Molecules and Biomolecules: Background and Applications

2010 ◽  
Vol 114 (37) ◽  
pp. 12068-12079 ◽  
Author(s):  
Ekaterina L. Ratkova ◽  
Gennady N. Chuev ◽  
Volodymyr P. Sergiievskyi ◽  
Maxim V. Fedorov

Author(s):  
Noé Sturm ◽  
Jiangming Sun ◽  
Yves Vandriessche ◽  
Andreas Mayr ◽  
Günter Klambauer ◽  
...  

<div>This article describes an application of high-throughput fingerprints (HTSFP) built upon industrial data accumulated over the years. </div><div>The fingerprint was used to build machine learning models (multi-task deep learning + SVM) for compound activity predictions towards a panel of 131 targets. </div><div>Quality of the predictions and the scaffold hopping potential of the HTSFP were systematically compared to traditional structural descriptors ECFP. </div><div><br></div>


2005 ◽  
Vol 70 (7) ◽  
pp. 957-968 ◽  
Author(s):  
Branko Kolaric ◽  
Ivan Juranic ◽  
Dragica Dumanovic

It is shown how a simple theoretical approach can be used for the investigation of electro-organic reactions.Mononitroimidazoles and mononitropyrazoles were studied by the semiempirical MNDO-PM3 molecular orbital method. The electrochemical reduction potentials of diazoles have been correlated with the energy of the lowest unoccupied molecular orbital (LUMO). It was found that an admirable correlation could be obtained by the introduction of simple structural descriptors as a correction to the energy of the LUMO. The interaction of a molecule with its surrounding depends on electrostatic potential and on steric hindrance. Most of these steric effects are taken into account using two parameters having a very limited set of integer values. The first (?) is the position of a ring substituent regarding ring nitrogens, which accounts for the different orientations of dipole moments and for the different shape of the electrostatic potential. The second (structural) parameter (?) is the type of the ring, which accounts mostly for different modes of electrode approach, and for different charge polarization patterns in two diazole rings. The extended correlation with ELUMO, ? and ?, is very good, having a regression coefficient r = 0.991. The intrinsic importance of ? and ? is exemplified by their high statistical weight.


2014 ◽  
Vol 86 (4) ◽  
pp. 489-495 ◽  
Author(s):  
Taisuke Matsuno ◽  
Hisashi Naito ◽  
Shunpei Hitosugi ◽  
Sota Sato ◽  
Motoko Kotani ◽  
...  

Abstract The structural chemistry of carbon nanotube molecules has been of increasing interest, as molecular entities with fundamental structures of finite nanotube molecules have emerged. For the new field to be developed further, appropriate structural descriptors are necessary as the basis for discussion. In this paper, we propose new geometric descriptors for finite nanotube molecules. Based on popular existing descriptors, these new descriptors provide geometric measures for length and bond- and atom-filling in tubular molecular structures.


Geoderma ◽  
2000 ◽  
Vol 95 (1-2) ◽  
pp. 15-32 ◽  
Author(s):  
S.J Mooney ◽  
N.M Holden ◽  
S.M Ward ◽  
J.F Collins

2016 ◽  
Vol 17 (1) ◽  
Author(s):  
Meijian Sun ◽  
Xia Wang ◽  
Chuanxin Zou ◽  
Zenghui He ◽  
Wei Liu ◽  
...  

2018 ◽  
Vol 4 (1) ◽  
Author(s):  
Marc O. J. Jäger ◽  
Eiaki V. Morooka ◽  
Filippo Federici Canova ◽  
Lauri Himanen ◽  
Adam S. Foster

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