Sparse Canonical Correlation Analysis with Application to Genomic Data Integration

2009 ◽  
Vol 8 (1) ◽  
pp. 1-34 ◽  
Author(s):  
Elena Parkhomenko ◽  
David Tritchler ◽  
Joseph Beyene
Keyword(s):  
Correlation Analysis ◽  
Data Integration ◽  
Canonical Correlation Analysis ◽  
Canonical Correlation ◽  
Genomic Data ◽  
Genomic Data Integration ◽  
Sparse Canonical Correlation Analysis

scholarly journals Group sparse canonical correlation analysis for genomic data integration

2013 ◽  
Vol 14 (1) ◽  
pp. 245 ◽  
Author(s):  
Dongdong Lin ◽  
Jigang Zhang ◽  
Jingyao Li ◽  
Vince D Calhoun ◽  
Hong-Wen Deng ◽  
...  
Keyword(s):  
Correlation Analysis ◽  
Data Integration ◽  
Canonical Correlation Analysis ◽  
Canonical Correlation ◽  
Genomic Data ◽  
Genomic Data Integration ◽  
Sparse Canonical Correlation Analysis

scholarly journals FlashPCA: fast sparse canonical correlation analysis of genomic data

2016 ◽  
Author(s):  
Gad Abraham ◽  
Michael Inouye
Keyword(s):  
Correlation Analysis ◽  
Canonical Correlation Analysis ◽  
Canonical Correlation ◽  
Genomic Data ◽  
R Package ◽  
Rapid Analysis ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Sparse Canonical Correlation Analysis ◽  
Gene Expression Levels

SummarySparse canonical correlation analysis (SCCA) is a useful approach for correlating one set of measurements, such as single nucleotide polymorphisms (SNPs), with another set of measurements, such as gene expression levels. We present a fast implementation of SCCA, enabling rapid analysis of hundreds of thousands of SNPs together with thousands of phenotypes. Our approach is implemented both as an R package flashpcaR and within the standalone commandline tool flashpca.Availability and implementationhttps://github.com/gabraham/[email protected]

scholarly journals Multivariate association between brain function and eating disorders using sparse canonical correlation analysis

PLoS ONE ◽  
2020 ◽  
Vol 15 (8) ◽  
pp. e0237511 ◽  
Author(s):  
Hyebin Lee ◽  
Bo-yong Park ◽  
Kyoungseob Byeon ◽  
Ji Hye Won ◽  
Mansu Kim ◽  
...  
Keyword(s):  
Eating Disorders ◽  
Correlation Analysis ◽  
Canonical Correlation Analysis ◽  
Brain Function ◽  
Canonical Correlation ◽  
Sparse Canonical Correlation Analysis
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