Shrinkage Estimation of Effect Sizes as an Alternative to Hypothesis Testing Followed by Estimation in High-Dimensional Biology: Applications to Differential Gene Expression

Zahra Montazeri; Corey M. Yanofsky; David R. Bickel

doi:10.2202/1544-6115.1504

Shrinkage Estimation of Effect Sizes as an Alternative to Hypothesis Testing Followed by Estimation in High-Dimensional Biology: Applications to Differential Gene Expression

Statistical Applications in Genetics and Molecular Biology ◽

10.2202/1544-6115.1504 ◽

2010 ◽

Vol 9 (1) ◽

Cited By ~ 5

Author(s):

Zahra Montazeri ◽

Corey M. Yanofsky ◽

David R. Bickel

Keyword(s):

Gene Expression ◽

Hypothesis Testing ◽

Differential Gene Expression ◽

Effect Sizes ◽

High Dimensional ◽

Shrinkage Estimation ◽

Differential Gene

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Validation of differential gene expression algorithms: Application comparing fold-change estimation to hypothesis testing

BMC Bioinformatics ◽

10.1186/1471-2105-11-63 ◽

2010 ◽

Vol 11 (1) ◽

Cited By ~ 7

Author(s):

Corey M Yanofsky ◽

David R Bickel

Keyword(s):

Gene Expression ◽

Hypothesis Testing ◽

Differential Gene Expression ◽

Fold Change ◽

Differential Gene

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Decision letter for "Retinal Defocus and Form‐Deprivation Induced Regional Differential Gene Expression of BMPs in Chick RPE"

10.1002/cne.24957/v1/decision1 ◽

2020 ◽

Keyword(s):

Gene Expression ◽

Differential Gene Expression ◽

Differential Gene

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Heritable, differential gene expression in pre-implantation embryos from rats with endometriosis and their daughters

10.32469/10355/10650 ◽

2010 ◽

Author(s):

Julie Amanda Birt

Keyword(s):

Gene Expression ◽

Differential Gene Expression ◽

Differential Gene

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Differential gene expression profiling induced by blood feeding in the biting midge vectorCulicoides imicola

10.1603/ice.2016.117657 ◽

2016 ◽

Author(s):

Wilma C. Fick

Keyword(s):

Gene Expression ◽

Gene Expression Profiling ◽

Differential Gene Expression ◽

Expression Profiling ◽

Blood Feeding ◽

Biting Midge ◽

Differential Gene

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Differential gene expression of SMAD family members and S1PR1 in circulating CD4+ T cells in multiple sclerosis

10.26226/morressier.59a3e8b5d462b8028d89495f ◽

2017 ◽

Author(s):

Jose Manuel Garcia Dominguez

Keyword(s):

Gene Expression ◽

Multiple Sclerosis ◽

T Cells ◽

Differential Gene Expression ◽

Cd4 T Cells ◽

Family Members ◽

Differential Gene

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Faculty Opinions recommendation of Differential gene expression shows natural brominated furanones interfere with the autoinducer-2 bacterial signaling system of Escherichia coli.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1022791.262646 ◽

2004 ◽

Author(s):

Eric S Gilbert

Keyword(s):

Gene Expression ◽

Escherichia Coli ◽

Differential Gene Expression ◽

Signaling System ◽

Autoinducer 2 ◽

Bacterial Signaling ◽

Differential Gene ◽

Brominated Furanones

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Faculty Opinions recommendation of Differential gene expression for investigation of Escherichia coli biofilm inhibition by plant extract ursolic acid.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1026939.327491 ◽

2005 ◽

Author(s):

Eric S Gilbert

Keyword(s):

Gene Expression ◽

Escherichia Coli ◽

Differential Gene Expression ◽

Ursolic Acid ◽

Plant Extract ◽

Biofilm Inhibition ◽

Differential Gene

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Faculty Opinions recommendation of In vitro culture of mouse embryos reduces differential gene expression between inner cell mass and trophectoderm.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.14266986.15779098 ◽

2012 ◽

Author(s):

Phyllis Leppert

Keyword(s):

Gene Expression ◽

In Vitro Culture ◽

Differential Gene Expression ◽

Inner Cell Mass ◽

Cell Mass ◽

Mouse Embryos ◽

Differential Gene

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Faculty Opinions recommendation of Differential gene expression of medullary thyroid carcinoma reveals specific markers associated with genetic conditions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.717967672.793471861 ◽

2013 ◽

Author(s):

Gilbert Cote

Keyword(s):

Gene Expression ◽

Thyroid Carcinoma ◽

Medullary Thyroid Carcinoma ◽

Differential Gene Expression ◽

Medullary Thyroid ◽

Differential Gene

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Faculty Opinions recommendation of Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.717971189.793469500 ◽

2013 ◽

Author(s):

Stephen Turner

Keyword(s):

Gene Expression ◽

Differential Gene Expression ◽

Rna Seq ◽

Web Tool ◽

Differential Gene

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