Understanding and applying prior distributions in Bayesian analyses

2021 ◽  
Vol 40 (4) ◽  
pp. 567-596
Author(s):  
Ji-Yoon Lee ◽  
Su-Young Kim
2019 ◽  
Author(s):  
Angelika Stefan ◽  
Nathan J. Evans ◽  
Eric-Jan Wagenmakers

The Bayesian statistical framework requires the specification of prior distributions, which reflect pre-data knowledge about the relative plausibility of different parameter values. As prior distributions influence the results of Bayesian analyses, it is important to specify them with care. Prior elicitation has frequently been proposed as a principled method for deriving prior distributions based on expert knowledge. Although prior elicitation provides a theoretically satisfactory method of specifying prior distributions, there are several implicit decisions that researchers need to make at different stages of the elicitation process, each of them constituting important researcher degrees of freedom. Here, we discuss some of these decisions and group them into three categories: decisions about (1) the setup of the prior elicitation; (2) the core elicitation process; and (3) combination of elicited prior distributions from different experts. Importantly, different decision paths could result in greatly varying priors elicited from the same experts. Hence, researchers who wish to perform prior elicitation are advised to carefully consider each of the practical decisions before, during, and after the elicitation process. By explicitly outlining the consequences of these practical decisions, we hope to raise awareness for methodological flexibility in prior elicitation and provide researchers with a more structured approach to navigate the decision paths in prior elicitation. Making the decisions explicit also provides the foundation for further research that can identify evidence-based best practices that may eventually reduce the methodologically flexibility in prior elicitation.


Author(s):  
Janet L. Peacock ◽  
Philip J. Peacock

Bayesian statistics 478 How Bayesian methods work 480 Prior distributions 482 Likelihood; posterior distributions 484 Summarizing and presenting results 486 Using Bayesian analyses in medicine 488 Software for Bayesian statistics 492 Reading Bayesian analyses in papers 494 Bayesian methods: a summary 496 In this chapter we describe the Bayesian approach to statistical analysis in contrast to the frequentist approach. We describe how Bayesian methods work including a description of prior and posterior distributions. We outline the role and choice of prior distributions and how they are combined with the data collected to provide an updated estimate of the unknown quantity being studied. We include examples of the use of Bayesian methods in medicine, and discuss the pros and cons of the Bayesian approach compared with the frequentist approach Finally, we give guidance on how to read and interpret Bayesian analyses in the medical literature....


2017 ◽  
Vol 22 (2) ◽  
pp. 288-303 ◽  
Author(s):  
Joseph W. Houpt ◽  
Andrew Heathcote ◽  
Ami Eidels

2018 ◽  
Author(s):  
Christopher Chabris ◽  
Patrick Ryan Heck ◽  
Jaclyn Mandart ◽  
Daniel Jacob Benjamin ◽  
Daniel J. Simons

Williams and Bargh (2008) reported that holding a hot cup of coffee caused participants to judge a person’s personality as warmer, and that holding a therapeutic heat pad caused participants to choose rewards for other people rather than for themselves. These experiments featured large effects (r = .28 and .31), small sample sizes (41 and 53 participants), and barely statistically significant results. We attempted to replicate both experiments in field settings with more than triple the sample sizes (128 and 177) and double-blind procedures, but found near-zero effects (r = –.03 and .02). In both cases, Bayesian analyses suggest there is substantially more evidence for the null hypothesis of no effect than for the original physical warmth priming hypothesis.


2021 ◽  
pp. 100079
Author(s):  
Vincent Fortuin ◽  
Adrià Garriga-Alonso ◽  
Mark van der Wilk ◽  
Laurence Aitchison

Stats ◽  
2021 ◽  
Vol 4 (1) ◽  
pp. 184-204
Author(s):  
Carlos Barrera-Causil ◽  
Juan Carlos Correa ◽  
Andrew Zamecnik ◽  
Francisco Torres-Avilés ◽  
Fernando Marmolejo-Ramos

Expert knowledge elicitation (EKE) aims at obtaining individual representations of experts’ beliefs and render them in the form of probability distributions or functions. In many cases the elicited distributions differ and the challenge in Bayesian inference is then to find ways to reconcile discrepant elicited prior distributions. This paper proposes the parallel analysis of clusters of prior distributions through a hierarchical method for clustering distributions and that can be readily extended to functional data. The proposed method consists of (i) transforming the infinite-dimensional problem into a finite-dimensional one, (ii) using the Hellinger distance to compute the distances between curves and thus (iii) obtaining a hierarchical clustering structure. In a simulation study the proposed method was compared to k-means and agglomerative nesting algorithms and the results showed that the proposed method outperformed those algorithms. Finally, the proposed method is illustrated through an EKE experiment and other functional data sets.


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