scholarly journals IDENTIFYING THE MORPHOLOGICAL GROWTH PATTERNS OF MICROBIOLOGICAL DATA TYPES USING COMPUTER-VISION AND STATISTICAL MODELLING

2020 ◽  
Vol 6 (10) ◽  
Author(s):  
SABEEHA SULTANA ◽  
MOHAMMAD BASHA
Fractals ◽  
1994 ◽  
Vol 02 (02) ◽  
pp. 297-301
Author(s):  
B. DUBUC ◽  
S. W. ZUCKER ◽  
M. P. STRYKER

A central issue in characterizing neuronal growth patterns is whether their arbors form clusters. Formal definitions of clusters have been elusive, although intuitively they appear to be related to the complexity of branching. Standard notions of complexity have been developed for point sets, but neurons are specialized "curve-like" objects. Thus we consider the problem of characterizing the local complexity of a "curve-like" measurable set. We propose an index of complexity suitable for defining clusters in such objects, together with an algorithm that produces a complexity map which gives, at each point on the set, precisely this index of complexity. Our index is closely related to the classical notions of fractal dimension, since it consists in determining the rate of growth of the area of a dilated set at a given scale, but it differs in two significant ways. First, the dilation is done normal to the local structure of the set, instead of being done isotropically. Second, the rate of growth of the area of this new set, which we named "normal complexity", is taken at a fixed (given) scale instead instead of around zero. The results will be key in choosing the appropriate representation when integrating local information in low level computer vision. As an application, they lead to the quantification of axonal and dendritic tree growth in neurons.


2018 ◽  
Author(s):  
Yaroslava Robles-Bykbaev ◽  
Salvador Naya ◽  
Silvia Díaz Prado ◽  
Daniel Calle-López ◽  
Vladimir Robles-Bykbaev ◽  
...  

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4794 ◽  
Author(s):  
Xavier A. Harrison ◽  
Lynda Donaldson ◽  
Maria Eugenia Correa-Cano ◽  
Julian Evans ◽  
David N. Fisher ◽  
...  

The use of linear mixed effects models (LMMs) is increasingly common in the analysis of biological data. Whilst LMMs offer a flexible approach to modelling a broad range of data types, ecological data are often complex and require complex model structures, and the fitting and interpretation of such models is not always straightforward. The ability to achieve robust biological inference requires that practitioners know how and when to apply these tools. Here, we provide a general overview of current methods for the application of LMMs to biological data, and highlight the typical pitfalls that can be encountered in the statistical modelling process. We tackle several issues regarding methods of model selection, with particular reference to the use of information theory and multi-model inference in ecology. We offer practical solutions and direct the reader to key references that provide further technical detail for those seeking a deeper understanding. This overview should serve as a widely accessible code of best practice for applying LMMs to complex biological problems and model structures, and in doing so improve the robustness of conclusions drawn from studies investigating ecological and evolutionary questions.


Author(s):  
Xavier A Harrison ◽  
Lynda Donaldson ◽  
Maria Eugenia Correa-Cano ◽  
Julian Evans ◽  
David N Fisher ◽  
...  

The use of linear mixed effects models (LMMs) is increasingly common in the analysis of biological data. Whilst LMMs offer a flexible approach to modelling a broad range of data types, ecological data are often complex and require complex model structures, and the fitting and interpretation of such models is not always straightforward. The ability to achieve robust biological inference requires that practitioners know how and when to apply these tools. Here, we provide a general overview of current methods for the application of LMMs to biological data, and highlight the typical pitfalls that can be encountered in the statistical modelling process. We tackle several issues relating to the use of information theory and multi-model inference in ecology, and demonstrate the tendency for data dredging to lead to greatly inflated Type I error rate (false positives) and impaired inference. We offer practical solutions and direct the reader to key references that provide further technical detail for those seeking a deeper understanding. This overview should serve as a widely accessible code of best practice for applying LMMs to complex biological problems and model structures, and in doing so improve the robustness of conclusions drawn from studies investigating ecological and evolutionary questions.


Author(s):  
Xavier A Harrison ◽  
Lynda Donaldson ◽  
Maria Eugenia Correa-Cano ◽  
Julian Evans ◽  
David N Fisher ◽  
...  

The use of linear mixed effects models (LMMs) is increasingly common in the analysis of biological data. Whilst LMMs offer a flexible approach to modelling a broad range of data types, ecological data are often complex and require complex model structures, and the fitting and interpretation of such models is not always straightforward. The ability to achieve robust biological inference requires that practitioners know how and when to apply these tools. Here, we provide a general overview of current methods for the application of LMMs to biological data, and highlight the typical pitfalls that can be encountered in the statistical modelling process. We tackle several issues relating to the use of information theory and multi-model inference in ecology, and demonstrate the tendency for data dredging to lead to greatly inflated Type I error rate (false positives) and impaired inference. We offer practical solutions and direct the reader to key references that provide further technical detail for those seeking a deeper understanding. This overview should serve as a widely accessible code of best practice for applying LMMs to complex biological problems and model structures, and in doing so improve the robustness of conclusions drawn from studies investigating ecological and evolutionary questions.


Author(s):  
Xavier A Harrison ◽  
Lynda Donaldson ◽  
Maria Eugenia Correa-Cano ◽  
Julian Evans ◽  
David N Fisher ◽  
...  

The use of linear mixed effects models (LMMs) is increasingly common in the analysis of biological data. Whilst LMMs offer a flexible approach to modelling a broad range of data types, ecological data are often complex and require complex model structures, and the fitting and interpretation of such models is not always straightforward. The ability to achieve robust biological inference requires that practitioners know how and when to apply these tools. Here, we provide a general overview of current methods for the application of LMMs to biological data, and highlight the typical pitfalls that can be encountered in the statistical modelling process. We tackle several issues relating to the use of information theory and multi-model inference in ecology, and demonstrate the tendency for data dredging to lead to greatly inflated Type I error rate (false positives) and impaired inference. We offer practical solutions and direct the reader to key references that provide further technical detail for those seeking a deeper understanding. This overview should serve as a widely accessible code of best practice for applying LMMs to complex biological problems and model structures, and in doing so improve the robustness of conclusions drawn from studies investigating ecological and evolutionary questions.


Author(s):  
William Dixon ◽  
Nathaniel Powers ◽  
Yang Song ◽  
Tolga Soyata

Enabling a machine to detect and recognize faces requires significant computational power. This particular system of face recognition makes use of OpenCV (Computer Vision) libraries while leveraging Graphics Processing Units (GPUs) to accelerate the process towards real-time. The processing and recognition algorithms are best sorted into three distinct steps: detection, projection, and search. Each of these steps has unique computational characteristics and requirements driving performance. In particular, the detection and projection processes can be accelerated significantly with GPU usage due to the data types and arithmetic types associated with the algorithms, such as matrix manipulation. This chapter provides a survey of the three main processes and how they contribute to the overarching recognition process.


1998 ◽  
Vol 3 ◽  
pp. 31-41
Author(s):  
Richard E. Blake

The need for a definition of discrete convergence in matching problems, which are essential in computer vision, is described and the fundamental properties of Scott lattice theory are outlined. Three data types: relational graphs, graph match_table and constraints, are considered and partial orderings are exhibited for them. A matching iteration consistent with the theory is sketched.


Author(s):  
Gerald Fine ◽  
Azorides R. Morales

For years the separation of carcinoma and sarcoma and the subclassification of sarcomas has been based on the appearance of the tumor cells and their microscopic growth pattern and information derived from certain histochemical and special stains. Although this method of study has produced good agreement among pathologists in the separation of carcinoma from sarcoma, it has given less uniform results in the subclassification of sarcomas. There remain examples of neoplasms of different histogenesis, the classification of which is questionable because of similar cytologic and growth patterns at the light microscopic level; i.e. amelanotic melanoma versus carcinoma and occasionally sarcoma, sarcomas with an epithelial pattern of growth simulating carcinoma, histologically similar mesenchymal tumors of different histogenesis (histiocytoma versus rhabdomyosarcoma, lytic osteogenic sarcoma versus rhabdomyosarcoma), and myxomatous mesenchymal tumors of diverse histogenesis (myxoid rhabdo and liposarcomas, cardiac myxoma, myxoid neurofibroma, etc.)


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