Water is the basis of natural resources and strategic economic resources.Deteriorated water environment of streams in Shenzhen city could have a great impact on ecological safety, people's health,and economic development.Based on the data of field observation and Remote sensing (RS) image,integrated analysis of the water degradation causes,and the changes of biochemical oxygen demand in five days(BOD5)concentration by mathematical model were carried out,which is on basis of percentage of waste water disposal,fresh water transformation,and harbor excavation, respectively.The results show that degradation causes of water quality were resulted from waste water discharge, harbor construction,and ecological environment damage, which could lead to slowly water exchange. Accordingly,the pollution can be easily to store in the bay,which result in water quality changes.The most important improved countermeasure is the control of waste water, which could be had a great effectiveness to decrease pollution.In addition, fresh water must be supplied after polluted water was cut off,which can be better improvement for water quality.This would be extreme improvement for hydrological dynamics due to 15m harbor excavation,which can significantly reduce BOD5 concentration.The innovation points of this paper is to mathematical model,which is based on the basis of qualitative analysis.