scholarly journals Shifting in the Dominant Bacterial Group Endozoicomonas Is Independent of the Dissociation With Coral Symbiont Algae

2020 ◽  
Vol 11 ◽  
Author(s):  
Jia-Ho Shiu ◽  
Sheng-Ping Yu ◽  
Chia-Ling Fong ◽  
Jiun-Yan Ding ◽  
Chih-Jui Tan ◽  
...  
Keyword(s):  
2015 ◽  
Vol 127 (33) ◽  
pp. 9823-9826 ◽  
Author(s):  
Maria Pechlaner ◽  
Daniela Donghi ◽  
Veronika Zelenay ◽  
Roland K. O. Sigel

2019 ◽  
Author(s):  
Susanne Kraemer ◽  
Arthi Ramachandran ◽  
David Colatriano ◽  
Connie Lovejoy ◽  
David A. Walsh

AbstractThe Arctic Ocean is relatively isolated from other oceans and consists of strongly stratified water masses with distinct histories, nutrient, temperature and salinity characteristics, therefore providing an optimal environment to investigate local adaptation. The globally distributed SAR11 bacterial group consists of multiple ecotypes that are associated with particular marine environments, yet relatively little is known about Arctic SAR11 diversity. Here, we examined SAR11 diversity using ITS analysis and metagenome-assembled genomes (MAGs). Arctic SAR11 assemblages were comprised of the S1a, S1b, S2, and S3 clades, and structured by water mass and depth. The fresher surface layer was dominated by an ecotype (S3-derived P3.2) previously associated with Arctic and brackish water. In contrast, deeper waters of Pacific origin were dominated by the P2.3 ecotype of the S2 clade, within which we identified a novel subdivision (P2.3s1) that was rare outside the Arctic Ocean. Arctic S2-derived SAR11 MAGs were restricted to high latitudes and included MAGs related to the recently defined S2b subclade, a finding consistent with bi-polar ecotypes and Arctic endemism. These results place the stratified Arctic Ocean into the SAR11 global biogeography and have identified SAR11 lineages for future investigation of adaptive evolution in the Arctic Ocean.


2015 ◽  
Vol 81 (20) ◽  
pp. 7098-7105 ◽  
Author(s):  
Ivana Seccareccia ◽  
Christian Kost ◽  
Markus Nett

ABSTRACTBacteria of the genusLysobacterare considered to be facultative predators that use a feeding strategy similar to that of myxobacteria. Experimental data supporting this assumption, however, are scarce. Therefore, the predatory activities of threeLysobacterspecies were tested in the prey spot plate assay and in the lawn predation assay, which are commonly used to analyze myxobacterial predation. Surprisingly, only one of the testedLysobacterspecies showed predatory behavior in the two assays. This result suggested that not allLysobacterstrains are predatory or, alternatively, that the assays were not appropriate for determining the predatory potential of this bacterial group. To differentiate between the two scenarios, predation was tested in a CFU-based bioassay. For this purpose, defined numbers ofLysobactercells were mixed together with potential prey bacteria featuring phenotypic markers, such as distinctive pigmentation or antibiotic resistance. After 24 h, cocultivated cells were streaked out on agar plates and sizes of bacterial populations were individually determined by counting the respective colonies. Using the CFU-based predation assay, we observed thatLysobacterspp. strongly antagonized other bacteria under nutrient-deficient conditions. Simultaneously, theLysobacterpopulation was increasing, which together with the killing of the cocultured bacteria indicated predation. Variation of the predator/prey ratio revealed that all threeLysobacterspecies tested needed to outnumber their prey for efficient predation, suggesting that they exclusively practiced group predation. In summary, the CFU-based predation assay not only enabled the quantification of prey killing and consumption byLysobacterspp. but also provided insights into their mode of predation.


Author(s):  
Nicolás Toro ◽  
María Dolores Molina-Sánchez ◽  
Rafael Nisa-Martínez ◽  
Francisco Martínez-Abarca ◽  
Fernando Manuel García-Rodríguez

Author(s):  
Guilherme Henrique da Silva ◽  
Nathan Oliveira Barros ◽  
Larice Aparecida Rezende Santana ◽  
Jailton da Costa Carneiro ◽  
Marcelo Henrique Otenio

Mobile DNA ◽  
2014 ◽  
Vol 5 (1) ◽  
pp. 8 ◽  
Author(s):  
Georg Hausner ◽  
Mohamed Hafez ◽  
David R Edgell

2017 ◽  
Vol 19 (11) ◽  
pp. 4714-4727 ◽  
Author(s):  
Kira Moon ◽  
Ilnam Kang ◽  
Suhyun Kim ◽  
Sang-Jong Kim ◽  
Jang-Cheon Cho

2015 ◽  
Vol 44 (4) ◽  
pp. 1845-1853 ◽  
Author(s):  
Caroline Monat ◽  
Benoit Cousineau

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