scholarly journals Identification of the Unwinding Region in the Clostridioides difficile Chromosomal Origin of Replication

2020 ◽  
Vol 11 ◽  
Author(s):  
Ana M. Oliveira Paiva ◽  
Erika van Eijk ◽  
Annemieke H. Friggen ◽  
Christoph Weigel ◽  
Wiep Klaas Smits
2020 ◽  
Author(s):  
Ana M. Oliveira Paiva ◽  
Erika van Eijk ◽  
Annemieke H. Friggen ◽  
Christoph Weigel ◽  
Wiep Klaas Smits

AbstractFaithful DNA replication is crucial for viability of cells across all kingdoms of life. Targeting DNA replication is a viable strategy for inhibition of bacterial pathogens. Clostridioides difficile is an important enteropathogen that causes potentially fatal intestinal inflammation. Knowledge about DNA replication in this organism is limited and no data is available on the very first steps of DNA replication. Here, we use a combination of in silico predictions and in vitro experiments to demonstrate that C. difficile employs a bipartite origin of replication that shows DnaA-dependent melting at oriC2, located in the dnaA-dnaN intergenic region. Analysis of putative origins of replication in different clostridia suggests that the main features of the origin architecture are conserved. This study is the first to characterize aspects of the origin region of C. difficile and contributes to our understanding of the initiation of DNA replication in clostridia.


Author(s):  
Kosmas Kosmidis ◽  
Kim Philipp Jablonski ◽  
Georgi Muskhelishvili ◽  
Marc-Thorsten Hütt

1982 ◽  
Vol 10 (8) ◽  
pp. 2639-2650 ◽  
Author(s):  
Y. Takeda ◽  
N.E. Harding ◽  
D.W. Smith ◽  
J.W. Zyskind

Microbiology ◽  
2006 ◽  
Vol 152 (2) ◽  
pp. 443-455 ◽  
Author(s):  
Christopher D. Sibley ◽  
Shawn R. MacLellan ◽  
Turlough Finan

The predicted chromosomal origin of replication (oriC) from the alfalfa symbiont Sinorhizobium meliloti is shown to allow autonomous replication of a normally non-replicating plasmid within S. meliloti cells. This is the first chromosomal replication origin to be experimentally localized in the Rhizobiaceae and its location, adjacent to hemE, is the same as for oriC in Caulobacter crescentus, the only experimentally characterized alphaproteobacterial oriC. Using an electrophoretic mobility shift assay and purified S. meliloti DnaA replication initiation protein, binding sites for DnaA were mapped in the S. meliloti oriC region. Mutations in these sites eliminated autonomous replication. S. meliloti that expressed DnaA from a plasmid lac promoter was observed to form pleomorphic filamentous cells, suggesting that cell division was perturbed. Interestingly, this cell phenotype is reminiscent of differentiated bacteroids found inside plant cells in alfalfa root nodules.


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