Faculty Opinions recommendation of Origin and evolution of the nuclear auxin response system.

Author(s):  
François Parcy ◽  
Leonie Verhage
2018 ◽  
Author(s):  
Sumanth K Mutte ◽  
Hirotaka Kato ◽  
Carl Rothfels ◽  
Michael Melkonian ◽  
Gane Ka-Shu Wong ◽  
...  

eLife ◽  
2018 ◽  
Vol 7 ◽  
Author(s):  
Sumanth K Mutte ◽  
Hirotaka Kato ◽  
Carl Rothfels ◽  
Michael Melkonian ◽  
Gane Ka-Shu Wong ◽  
...  

The small signaling molecule auxin controls numerous developmental processes in land plants, acting mostly by regulating gene expression. Auxin response proteins are represented by large families of diverse functions, but neither their origin nor their evolution is understood. Here, we use a deep phylogenomics approach to reconstruct both the origin and the evolutionary trajectory of all nuclear auxin response protein families. We found that, while all subdomains are ancient, a complete auxin response mechanism is limited to land plants. Functional phylogenomics predicts defined steps in the evolution of response system properties, and comparative transcriptomics across six ancient lineages revealed how these innovations shaped a sophisticated response mechanism. Genetic analysis in a basal land plant revealed unexpected contributions of ancient non-canonical proteins in auxin response as well as auxin-unrelated function of core transcription factors. Our study provides a functional evolutionary framework for understanding diverse functions of the auxin signal.


2017 ◽  
Author(s):  
Sumanth K. Mutte ◽  
Hirotaka Kato ◽  
Carl Rothfels ◽  
Michael Melkonian ◽  
Gane Ka-Shu Wong ◽  
...  

AbstractThe small signaling molecule auxin controls numerous developmental processes in land plants, acting mostly by regulating gene expression. Auxin response proteins are represented by large families of diverse functions, but neither their origin nor their evolution is understood. Here we use a deep phylogenomics approach to reconstruct both the origin and the evolutionary trajectory of all nuclear auxin response protein families. We found that, while all subdomains are ancient, a complete auxin response mechanism is limited to land plants. Functional phylogenomics predicts defined steps in the evolution of response system properties, and comparative transcriptomics across six ancient lineages revealed how these innovations shaped a sophisticated response mechanism. Genetic analysis in a basal land plant revealed unexpected contributions of ancient non-canonical proteins in auxin response as well as auxin-unrelated function of core transcription factors. Our study provides a functional evolutionary framework for understanding diverse functions of the auxin signal.


Nature Plants ◽  
2020 ◽  
Vol 6 (5) ◽  
pp. 473-482 ◽  
Author(s):  
Hirotaka Kato ◽  
Sumanth K. Mutte ◽  
Hidemasa Suzuki ◽  
Isidro Crespo ◽  
Shubhajit Das ◽  
...  

2019 ◽  
Author(s):  
Hirotaka Kato ◽  
Sumanth K. Mutte ◽  
Hidemasa Suzuki ◽  
Isidro Crespo ◽  
Shubhajit Das ◽  
...  

Auxin controls numerous growth processes in land plants through a gene expression system that modulates ARF transcription factor activity1–3. Gene duplications in families encoding auxin response components have generated tremendous complexity in most land plants, and neofunctionalization enabled various unique response outputs during development2–4. However, it is unclear what fundamental biochemical principles underlie this complex response system. By studying the minimal system in Marchantia polymorpha, we derive an intuitive and simple model where a single auxin-dependent A-ARF activates gene expression. It is antagonized by an auxin-independent B-ARF that represses common target genes. Expression patterns of both ARF proteins define developmental zones where auxin response is permitted, quantitatively tuned, or prevented. This fundamental design likely represents the ancestral system, and formed the basis for inflated, complex systems.


2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Xiufen Dong ◽  
Chao Ma ◽  
Tao Xu ◽  
Michael S. Reid ◽  
Cai-Zhong Jiang ◽  
...  

AbstractAuxin plays a central role in control of organ abscission, and it is thought that changes in the auxin gradient across the abscission zone are the primary determinant of the onset of abscission. The nature of this gradient, whether in concentration, flow, or perhaps in the response system has not conclusively been determined. We employed a DR5::GUS auxin response reporter system to examine the temporal and spatial distribution of the auxin response activity in response to developmental and environmental cues during pedicel abscission in tomato. In pedicels of young and fully open flowers, auxin response, as indicated by GUS activity, was predominantly detected in the vascular tissues and was almost entirely confined to the abscission zone (AZ) and to the distal portion of the pedicel, with a striking reduction in the proximal tissues below the AZ—a ‘step’, rather than a gradient. Following pollination and during early fruit development, auxin response increased substantially throughout the pedicel. Changes in GUS activity following treatments that caused pedicel abscission (flower removal, high temperature, darkness, ethylene, or N-1-naphthylphthalamic acid (NPA) treatment) were relatively minor, with reduced auxin response in the AZ and some reduction above and below it. Expression of genes encoding some auxin efflux carriers (PIN) and influx carriers (AUX⁄LAX) was substantially reduced in the abscission zone of NPA-treated pedicels, and in pedicels stimulated to abscise by flower removal. Our results suggest that changes in auxin flow distribution through the abscission zone are likely more important than the auxin response system in the regulation of abscission.


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