Distribution and Correlation of the Coding Sequence Lengths in Bacterial Genomes

2008 ◽  
Vol 59 (11) ◽  
Author(s):  
Vasile V. Morariu
Keyword(s):  
Correlation Analysis ◽  
Exponential Function ◽  
Short Range ◽  
Statistical Physics ◽  
Bacterial Genomes ◽  
Coding Sequence ◽  
Correlation Properties ◽  
Short Range Correlations ◽  
Fluctuating System

The length of coding sequence (CDS) series in bacterial genomes were regarded as a fluctuating system and characterized by the methods of statistical physics. The distribution and the correlation properties of CDS for 47 genomes were investigated. The distribution was found to be approximated by an exponential function while the correlation analysis revealed short range correlations.

scholarly journals An Interpretation of the Ancestral Codon from Miller's Amino Acids and Nucleotide Correlations in Modern Coding Sequences

2015 ◽  
Vol 9 ◽  
pp. BBI.S24021 ◽  
Author(s):  
Nicolas Carels ◽  
Miguel Ponce de Leon
Keyword(s):  
Amino Acids ◽  
Physicochemical Properties ◽  
Living Cell ◽  
Short Range ◽  
Functional Constraints ◽  
Coding Sequences ◽  
Universal Correlation ◽  
Correlation Properties ◽  
Discharge Experiment ◽  
Short Range Correlations

Purine bias, which is usually referred to as an “ancestral codon”, is known to result in short-range correlations between nucleotides in coding sequences, and it is common in all species. We demonstrate that RWY is a more appropriate pattern than the classical RNY, and purine bias (Rrr) is the product of a network of nucleotide compensations induced by functional constraints on the physicochemical properties of proteins. Through deductions from universal correlation properties, we also demonstrate that amino acids from Miller's spark discharge experiment are compatible with functional primeval proteins at the dawn of living cell radiation on earth. These amino acids match the hydropathy and secondary structures of modern proteins.

scholarly journals 0νββ-decay nuclear matrix elements with self-consistent short-range correlations

2009 ◽  
Vol 79 (5) ◽  
Author(s):  
Fedor Šimkovic ◽  
Amand Faessler ◽  
Herbert Müther ◽  
Vadim Rodin ◽  
Markus Stauf
Keyword(s):  
Nuclear Matrix ◽  
Short Range ◽  
Matrix Elements ◽  
Self Consistent ◽  
Short Range Correlations

Short-range correlations in (d, p) stripping reactions

1974 ◽  
Vol 22 (3) ◽  
pp. 345-356 ◽  
Author(s):  
A. Osman ◽  
M. Zaky
Keyword(s):  
Short Range ◽  
Short Range Correlations

Two-body short-range correlations and Coulomb matrix elements

1974 ◽  
Vol 10 (2) ◽  
pp. 931-932 ◽  
Author(s):  
G. F. Bertsch ◽  
S. Shlomo
Keyword(s):  
Short Range ◽  
Matrix Elements ◽  
Coulomb Matrix ◽  
Short Range Correlations

Short-range correlations and parity impurities

1971 ◽  
Vol 161 (2) ◽  
pp. 625-636 ◽  
Author(s):  
M. Gari ◽  
H. Kümmel ◽  
J.G. Zabolitzky
Keyword(s):  
Short Range ◽  
Short Range Correlations
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