scholarly journals A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR)

2020 ◽  
Vol 16 ◽  
pp. 2645-2662
Author(s):  
Benjamin P Kellman ◽  
Yujie Zhang ◽  
Emma Logomasini ◽  
Eric Meinhardt ◽  
Karla P Godinez-Macias ◽  
...  
Keyword(s):  
Linear Code ◽  
Original Description ◽  
Glycan Structure ◽  
Database Queries ◽  
Structure Representation ◽  
Reaction Rule ◽  
Analysis Tools ◽  
Biosynthesis Regulation

Systems glycobiology aims to provide models and analysis tools that account for the biosynthesis, regulation, and interactions with glycoconjugates. To facilitate these methods, there is a need for a clear glycan representation accessible to both computers and humans. Linear Code, a linearized and readily parsable glycan structure representation, is such a language. For this reason, Linear Code was adapted to represent reaction rules, but the syntax has drifted from its original description to accommodate new and originally unforeseen challenges. Here, we delineate the consensuses and inconsistencies that have arisen through this adaptation. We recommend options for a consensus-based extension of Linear Code that can be used for reaction rule specification going forward. Through this extension and specification of Linear Code to reaction rules, we aim to minimize inconsistent symbology thereby making glycan database queries easier. With a clear guide for generating reaction rule descriptions, glycan synthesis models will be more interoperable and reproducible thereby moving glycoinformatics closer to compliance with FAIR standards. Here, we present Linear Code for Reaction Rules (LiCoRR), version 1.0, an unambiguous representation for describing glycosylation reactions in both literature and code.

scholarly journals A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR)

2020 ◽  
Author(s):  
Benjamin P. Kellman ◽  
Yujie Zhang ◽  
Emma Logomasini ◽  
Eric Meinhardt ◽  
Austin W. T. Chiang ◽  
...  
Keyword(s):  
Linear Code ◽  
Original Description ◽  
Glycan Structure ◽  
Database Queries ◽  
Structure Representation ◽  
Reaction Rule ◽  
Analysis Tools ◽  
Biosynthesis Regulation

AbstractSystems glycobiology aims to provide models and analysis tools that account for the biosynthesis, regulation, and interactions with glycoconjugates. To facilitate these methods, there is a need for a clear glycan representation accessible to both computers and humans. Linear Code, a linearized and readily parsable glycan structure representation, is such a language. For this reason, Linear Code was adapted to represent reaction rules, but the syntax has drifted from its original description to accommodate new and originally unforeseen challenges. Here, we delineate the consensuses and inconsistencies that have arisen through this adaptation. We recommend options for a consensus-based extension of Linear Code that can be used for reaction rule specification going forward. Through this extension and specification of Linear Code to reaction rules, we aim to minimize inconsistent symbology thereby making glycan database queries easier. With a clear guide for generating reaction rule descriptions, glycan synthesis models will be more interoperable and reproducible thereby moving glycoinformatics closer to compliance with FAIR standards. Reaction rule-extended Linear Code is an unambiguous representation for describing glycosylation reactions in both literature and code.

Finding decision support requirements for effective intelligence analysis tools

2005 ◽  
Author(s):  
William Elm ◽  
Scott Potter ◽  
James Tittle ◽  
David Woods ◽  
Justin Grossman ◽  
...  
Keyword(s):  
Decision Support ◽  
Intelligence Analysis ◽  
Analysis Tools

Current distribution of Nilgiri grass yellow Eurema nilgiriensis Yata (Lepidoptera: Pieridae), with an updated taxonomic key to Eurema of Western Ghats, India

ENTOMON ◽  
2019 ◽  
Vol 44 (1) ◽  
pp. 23-32 ◽  
Author(s):  
P. C. Sujitha ◽  
G. Prasad ◽  
R. Nitin ◽  
Dipendra Nath Basu ◽  
Krushnamegh Kunte ◽  
...  
Keyword(s):  
Current Distribution ◽  
Western Ghats ◽  
Original Description ◽  
High Elevation ◽  
Type Locality ◽  
Ecological Data ◽  
Field Identification ◽  
Wing Patterns ◽  
Southern Western Ghats ◽  
The Nilgiris

Eurema nilgiriensis Yata, 1990, the Nilgiri grass yellow, was described from Nilgiris in southern India. There are not many published records of this species since its original description, and it was presumed to be a high-elevation endemic species restricted to its type locality. Based on the external morphology (wing patterns) as well as the male genitalia, the first confirmed records of the species from Agasthyamalais and Kodagu in the southern Western Ghats, is provided here. This report is a significant range extension for the species outside the Nilgiris, its type locality. Ecological data pertaining to this species as well as the field identification key to all known Eurema of Western Ghats are also presented.

An annotated checklist of mesoplodont whale species (Cetacea, Ziphiidae) discovered during the nineteenth century

2015 ◽  
Vol 42 (2) ◽  
pp. 226-235 ◽  
Author(s):  
G. N. H. Waller
Keyword(s):  
Nineteenth Century ◽  
Additional Data ◽  
Original Description ◽  
Type Specimen ◽  
External Morphology ◽  
Type Locality ◽  
Type Material ◽  
Beaked Whale ◽  
Registration Number ◽  
Annotated Checklist

Eight species of mesoplodont whales (genus Mesoplodon Gervais, 1850) named during the nineteenth century are based on valid descriptions. A checklist with the original description and type material for each of these species is provided. Additional data given may include type locality and illustrative sources, type material holding institution and type registration number(s). The only type specimen for which a record of external morphology was published relates to the 1803 stranding of Sowerby's beaked whale (Mesoplodon bidens).

Improving Production System Performance Using Overall Equipment Effectiveness

2020 ◽  
Vol 6 (1) ◽  
Author(s):  
Lance Clarence ◽  
Wan Muhammad Noor Sarbani Mat Daud
Keyword(s):  
Production System ◽  
System Performance ◽  
Intelligent System ◽  
Global Market ◽  
Equipment Failure ◽  
Intuitive Knowledge ◽  
Analysis Tools ◽  
New Process ◽  
Knowledge Delivery

In the competition among organization on the global market, no organization will tolerate losses. Overall Equipment Effectiveness (OEE) overall is a new process in which the efficiency of a system is calculated and complicated manufacturing issues are truly simplified to simple and intuitive knowledge delivery. It thinks about the exceptionally important measures of productivity. An endeavour has been done to measure and analyse existing Overall Equipment Effectiveness (OEE) at company Kirino in hope to reduce unplanned downtime losses on equipment failure and tooling damage to maximize the productivity. The methods used to analyse these various causes were analysis tools and Intelligence Systems. After knowing the causes of various activities that leads to high rates of defects, then recommendations for improvements that could be used by company Kirino were ready to be made using intelligent system as a medium of solution

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