A Comparative Study of Associative Classifiers in Mesenchymal Stem Cell Differentiation Analysis

Data Mining ◽  
2013 ◽  
pp. 970-990
Author(s):  
Weiqi Wang ◽  
Yanbo J. Wang ◽  
Qin Xin ◽  
René Bañares-Alcántara ◽  
Frans Coenen ◽  
...  

Discovering how Mesenchymal Stem Cells (MSCs) can be differentiated is an important topic in stem cell therapy and tissue engineering. In a general context, such differentiation analysis can be modeled as a classification problem in data mining. Specifically, this is concerned with the single-label multi-class classification task. Previous studies on this topic suggests the Associative Classification (AC) rather than other alternative (Classification) techniques, and presented classification results based on the CMAR (Classification based on Multiple Association Rules) associative classifier. Other AC algorithms include: CBA (Classification Based on Associations), PRM (Predictive Rule Mining), CPAR (Classification based on Predictive Association Rules) and TFPC (Total From Partial Classification). The main aim of this chapter is to compare the performance of different associative classifiers, in terms of classification accuracy, efficiency, number of rules to be generated, quality of such rules, and the maximum number of attributes in rule-antecedents, with respect to MSC differentiation analysis.

Author(s):  
Weiqi Wang ◽  
Yanbo J. Wang ◽  
Qin Xin ◽  
René Bañares-Alcántara ◽  
Frans Coenen ◽  
...  

Discovering how Mesenchymal Stem Cells (MSCs) can be differentiated is an important topic in stem cell therapy and tissue engineering. In a general context, such differentiation analysis can be modeled as a classification problem in data mining. Specifically, this is concerned with the single-label multi-class classification task. Previous studies on this topic suggests the Associative Classification (AC) rather than other alternative (Classification) techniques, and presented classification results based on the CMAR (Classification based on Multiple Association Rules) associative classifier. Other AC algorithms include: CBA (Classification Based on Associations), PRM (Predictive Rule Mining), CPAR (Classification based on Predictive Association Rules) and TFPC (Total From Partial Classification). The main aim of this chapter is to compare the performance of different associative classifiers, in terms of classification accuracy, efficiency, number of rules to be generated, quality of such rules, and the maximum number of attributes in rule-antecedents, with respect to MSC differentiation analysis.


2019 ◽  
Vol 7 (6) ◽  
pp. 2452-2467 ◽  
Author(s):  
Shijie Liu ◽  
Yiyun Wang ◽  
Jian Wang ◽  
Pengcheng Qiu ◽  
Shengyu Wang ◽  
...  

Bone regenerative therapies have been explored using various biomaterial systems.


2015 ◽  
Vol 35 (10) ◽  
pp. 1700-1711 ◽  
Author(s):  
Fenfang Chen ◽  
Xia Lin ◽  
Pinglong Xu ◽  
Zhengmao Zhang ◽  
Yanzhen Chen ◽  
...  

Bone morphogenetic proteins (BMPs) play vital roles in regulating stem cell maintenance and differentiation. BMPs can induce osteogenesis and inhibit myogenesis of mesenchymal stem cells. Canonical BMP signaling is stringently controlled through reversible phosphorylation and nucleocytoplasmic shuttling of Smad1, Smad5, and Smad8 (Smad1/5/8). However, how the nuclear export of Smad1/5/8 is regulated remains unclear. Here we report that the Ran-binding protein RanBP3L acts as a nuclear export factor for Smad1/5/8. RanBP3L directly recognizes dephosphorylated Smad1/5/8 and mediates their nuclear export in a Ran-dependent manner. Increased expression of RanBP3L blocks BMP-induced osteogenesis of mouse bone marrow-derived mesenchymal stem cells and promotes myogenic induction of C2C12 mouse myoblasts, whereas depletion of RanBP3L expression enhances BMP-dependent stem cell differentiation activity and transcriptional responses. In conclusion, our results demonstrate that RanBP3L, as a nuclear exporter for BMP-specific Smads, plays a critical role in terminating BMP signaling and regulating mesenchymal stem cell differentiation.


Cell Reports ◽  
2016 ◽  
Vol 16 (3) ◽  
pp. 769-780 ◽  
Author(s):  
Menghui Jiang ◽  
Chunxing Zheng ◽  
Peishun Shou ◽  
Na Li ◽  
Gang Cao ◽  
...  

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