scholarly journals Comparison of UV spectrometry and fluorometry-based methods for quantification of cell-free DNA in red cell components

2019 ◽  
Vol 13 (2) ◽  
pp. 95 ◽  
Author(s):  
Dheeraj Khetan ◽  
Nitesh Gupta ◽  
Rajendra Chaudhary ◽  
JaiShankar Shukla
2020 ◽  
Vol 47 (5) ◽  
pp. 409-419
Author(s):  
Nitesh Gupta ◽  
Dheeraj Khetan ◽  
Rajendra Chaudhary ◽  
Jai Shankar Shukla

Introduction: Damage to a cell and the loss of integrity of its cell membrane leads to the release of endogenous immunogenic molecules, which together are classified as “damage-associated molecular patterns” (DAMPs). Cell-free DNA (cf-DNA) released from nucleosomes may serve as a proco­agulant cofactor and may be an important mediator of immunomodulatory and proinflammatory effects associated with blood transfusion. Objectives: To assess the levels of cf-DNA in supernatants of stored red cell components and the effect of leukoreduction and gamma irradiation on the release of cf-DNA during storage. Methods: This is a prospective cohort study on 99 stored red cell components, randomly divided into three groups – buffy coat (BC)-depleted, leuko-filtered (LP), and irradiated (IR) packed red blood cells. Red cell supernatants were drawn over a period of 21 days at three different time points (day 0, 7, and 21) from the study units. cf-DNA extraction was done and quantified by a bench top fluorometer. Change in cf-DNA content, rate of change (μg/day), and percent change were estimated and compared across different groups. Results: cf-DNA content increased (p = 0.000) with storage duration in the BC (median = 238.66 μg, interquartile range [IQR] = 168.42 on day 21 vs. median = 9.44 μg, IQR = 5.23 on day 0) and IR groups (p = 0.000) (median = 245.55 μg, IQR = 253.88 on day 21 vs. median = 7.07 μg, IQR = 13.58 on day 0), while there was a decreasing trend (p = 0.032) in the LP group (median = 4.55 μg, IQR = 10.73 on day 21 vs. median = 8.66 μg, IQR = 6.56 on day 0). The median rate of change in cf-DNA content (11.13 μg/day) and percent change in cf-DNA content (median = 4,106.16%) was highest in the IR group. Conclusions: Stored red cell components contain significant amount of cf-DNA. Release of cf-DNA is further aggravated by irradiation while leukoreduction leads to a decrease in cf-DNA content.


2016 ◽  
Vol 2016 ◽  
pp. 1-5 ◽  
Author(s):  
Andrew W. Shih ◽  
Vinai C. Bhagirath ◽  
Nancy M. Heddle ◽  
Jason P. Acker ◽  
Yang Liu ◽  
...  

Background. Whole blood donations in Canada are processed by either the red cell filtration (RCF) or whole blood filtration (WBF) methods, where leukoreduction is potentially delayed in WBF. Fresh WBF red blood cells (RBCs) have been associated with increased in-hospital mortality after transfusion. Cell-free DNA (cfDNA) is released by neutrophils prior to leukoreduction, degraded during RBC storage, and is associated with adverse patient outcomes. We explored cfDNA levels in RBCs prepared by RCF and WBF and different storage durations. Methods. Equal numbers of fresh (stored ≤14 days) and older RBCs were sampled. cfDNA was quantified by spectrophotometry and PicoGreen. Separate regression models determined the association with processing method and storage duration and their interaction on cfDNA. Results. cfDNA in 120 RBC units (73 RCF, 47 WBF) were measured. Using PicoGreen, WBF units overall had higher cfDNA than RCF units (p=0.0010); fresh WBF units had higher cfDNA than fresh RCF units (p=0.0093). Using spectrophotometry, fresh RBC units overall had higher cfDNA than older units (p=0.0031); fresh WBF RBCs had higher cfDNA than older RCF RBCs (p=0.024). Conclusion. Higher cfDNA in fresh WBF was observed compared to older RCF blood. Further study is required for association with patient outcomes.


Diabetes ◽  
2020 ◽  
Vol 69 (Supplement 1) ◽  
pp. 304-OR
Author(s):  
CHANG ZENG ◽  
YING YANG ◽  
ZHOU ZHANG ◽  
CHUAN HE ◽  
WEI ZHANG ◽  
...  

Author(s):  
K. G. Avetisova ◽  
◽  
S. V. Kostyuk ◽  
E. V. Kostyuk ◽  
E. S. Ershova ◽  
...  
Keyword(s):  
Dnase I ◽  

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