scholarly journals Lake mixing regime selects apparent methane oxidation kinetics of the methanotroph assemblage

2020 ◽  
Vol 17 (16) ◽  
pp. 4247-4259
Author(s):  
Magdalena J. Mayr ◽  
Matthias Zimmermann ◽  
Jason Dey ◽  
Bernhard Wehrli ◽  
Helmut Bürgmann
Keyword(s):  
Methane Oxidation ◽  
Oxidation Kinetics ◽  
Methane Monooxygenase ◽  
Stable Stratification ◽  
Methane Oxidizing Bacteria ◽  
Half Saturation Constant ◽  
Genes Encoding ◽  
Methane Oxidation Rate ◽  
Kinetics Of ◽  
Methane Concentrations

Abstract. In lakes, large amounts of methane are produced in anoxic sediments. Methane-oxidizing bacteria effectively convert this potent greenhouse gas into biomass and carbon dioxide. These bacteria are present throughout the water column, where methane concentrations can range from nanomolar to millimolar. In this study, we tested the hypothesis that methanotroph assemblages in a seasonally stratified freshwater lake are adapted to the contrasting methane concentrations in the epi- and hypolimnion. We further hypothesized that lake overturn would change the apparent methane oxidation kinetics as more methane becomes available in the epilimnion. In addition to the change in the methane oxidation kinetics, we investigated changes in the transcription of genes encoding methane monooxygenase, the enzyme responsible for the first step of methane oxidation, with metatranscriptomics. Using laboratory incubations of the natural microbial communities, we show that the half-saturation constant (Km) for methane – the methane concentration at which half the maximum methane oxidation rate is reached – was 20 times higher in the hypolimnion than in the epilimnion during stable stratification. During lake overturn, however, the kinetic constants in the epi- and hypolimnion converged along with a change in the transcriptionally active methanotroph assemblage. Conventional particulate methane monooxygenase appeared to be responsible for methane oxidation under different methane concentrations. Our results suggest that methane availability is one important factor for creating niches for methanotroph assemblages with well-adapted methane oxidation kinetics. This rapid selection and succession of adapted lacustrine methanotroph assemblages allowed the previously reported high removal efficiency of methane transported to the epilimnion to be maintained – even under rapidly changing conditions during lake overturn. Consequently, only a small fraction of methane stored in the anoxic hypolimnion is emitted to the atmosphere.

scholarly journals Lake mixing regime selects methane-oxidation kinetics of the methanotroph assemblage

2020 ◽  
Author(s):  
Magdalena J. Mayr ◽  
Matthias Zimmermann ◽  
Jason Dey ◽  
Bernhard Wehrli ◽  
Helmut Bürgmann
Keyword(s):  
Methane Oxidation ◽  
Oxidation Kinetics ◽  
Methane Monooxygenase ◽  
Stable Stratification ◽  
Stratified Lakes ◽  
Methane Oxidizing Bacteria ◽  
Half Saturation Constant ◽  
Genes Encoding ◽  
Natural Microbial Community ◽  
Methane Concentrations

Abstract. In freshwater lakes, large amounts of methane are produced in anoxic sediments. Methane-oxidizing bacteria effectively convert this potent greenhouse gas into biomass and carbon dioxide. These bacteria are present throughout the water column where methane concentrations can range from nanomolar to millimolar concentrations. In this study, we tested the hypothesis that methanotroph assemblages in seasonally stratified lakes are adapted to the contrasting methane concentrations in the epi- and hypolimnion. We further hypothesized that lake overturn would change the methane oxidation kinetics as more methane becomes available in the epilimnion. Together with the change of methane oxidation kinetics, we investigated changes in the transcription of genes encoding methane monooxygenase, the enzyme responsible for the first step of methane oxidation, with metatranscriptomics. We show that the half-saturation constant (Km) for methane, obtained from laboratory experiments with the natural microbial community, differed by two orders of magnitude between epi- and hypolimnion during stable stratification. During lake overturn, however, the kinetic constants in the epi- and hypolimnion converged along with a change of the transcriptionally active methanotroph assemblage. Conventional particulate methane monooxygenase appeared to be responsible for methane oxidation under different methane concentrations. Our results suggest that methane availability is important for creating niches for methanotroph assemblages with well-adapted methane-oxidation kinetics. This rapid selection and succession of adapted lacustrine methanotroph assemblages allows high methane removal efficiency of more than 90 % to be maintained even under rapidly changing conditions during lake overturn. Consequently, only a small fraction of methane stored in the anoxic hypolimnion is emitted to the atmosphere.

scholarly journals Supplementary material to "Lake mixing regime selects methane-oxidation kinetics of the methanotroph assemblage"

2020 ◽  
Author(s):  
Magdalena J. Mayr ◽  
Matthias Zimmermann ◽  
Jason Dey ◽  
Bernhard Wehrli ◽  
Helmut Bürgmann
Keyword(s):  
Methane Oxidation ◽  
Oxidation Kinetics ◽  
Lake Mixing ◽  
Mixing Regime ◽  
Supplementary Material ◽  
Kinetics Of

scholarly journals Methane oxidizing seawater microbial communities from an Arctic shelf

2017 ◽  
Author(s):  
Christiane Uhlig ◽  
John B. Kirkpatrick ◽  
Steve D'Hondt ◽  
Brice Loose
Keyword(s):  
Sea Ice ◽  
Microbial Communities ◽  
Methane Oxidation ◽  
Methane Concentration ◽  
Oxidation Potential ◽  
Arctic Shelf ◽  
Natural Seawater ◽  
Methane Oxidizing Bacteria ◽  
High Concentrations ◽  
Methane Concentrations

Abstract. Microbial communities of the ocean can consume methane dissolved in seawater before it has a chance to escape to the atmosphere and contribute to greenhouse warming. Seawater over the shallow Arctic shelf is characterized by excess methane compared to the atmospheric equilibrium originating in sediments, permafrost and hydrates. Particularly high concentrations are found beneath sea ice. We studied the structure and methane oxidation potential of the microbial communities from seawater collected close to Utqiagvik, Alaska, in April 2016. The in situ methane concentrations were 16.3 ± 7.2 nmol L−1, approximately 4.8 times oversaturated compared to the atmospheric equilibrium. The group of methane oxidizing bacteria (MOB) in the natural seawater and seawater incubations was > 97 % dominated by Methylococcacales (γ-Proteobacteria). Incubations of seawater under a range of methane concentrations led to a loss of diversity in the bacterial community. The abundance of MOB was low with maximal fractions of 2.5 % at 200 times elevated methane concentration, while sequence reads of non-MOB methylotrophs were four times more abundant than MOB in most incubations. The abundances of MOB as well as non-MOB methylotrophs correlated tightly with the rate constant (kox) for methane oxidation, indicating that non-MOB methylotrophs might be coupled to MOB and involved in community methane oxidation. In sea ice, where methane concentrations of 82 ± 35.8 nmol kg−1 were found, Methylobacterium (α-Proteobacteria) was the dominant MOB with a relative abundance of 80 %. MOB abundances were very low in sea ice, with maximal fractions found at the ice-snow interface (0.1 %), while non-MOB-methlylotrophs were present in abundances compared to natural seawater communities. The differences in MOB taxa and an offset in methane concentration and stable isotope ratios between the ice and the water column point toward different methane cycling processes in both habitats.

scholarly journals Methane-oxidizing seawater microbial communities from an Arctic shelf

2018 ◽  
Vol 15 (11) ◽  
pp. 3311-3329 ◽  
Author(s):  
Christiane Uhlig ◽  
John B. Kirkpatrick ◽  
Steven D'Hondt ◽  
Brice Loose
Keyword(s):  
Sea Ice ◽  
Microbial Communities ◽  
Methane Oxidation ◽  
Oxidation Potential ◽  
Arctic Shelf ◽  
Natural Seawater ◽  
Methane Oxidizing Bacteria ◽  
High Concentrations ◽  
Marine Microbial Communities ◽  
Methane Concentrations

Abstract. Marine microbial communities can consume dissolved methane before it can escape to the atmosphere and contribute to global warming. Seawater over the shallow Arctic shelf is characterized by excess methane compared to atmospheric equilibrium. This methane originates in sediment, permafrost, and hydrate. Particularly high concentrations are found beneath sea ice. We studied the structure and methane oxidation potential of the microbial communities from seawater collected close to Utqiagvik, Alaska, in April 2016. The in situ methane concentrations were 16.3 ± 7.2 nmol L−1, approximately 4.8 times oversaturated relative to atmospheric equilibrium. The group of methane-oxidizing bacteria (MOB) in the natural seawater and incubated seawater was > 97 % dominated by Methylococcales (γ-Proteobacteria). Incubations of seawater under a range of methane concentrations led to loss of diversity in the bacterial community. The abundance of MOB was low with maximal fractions of 2.5 % at 200 times elevated methane concentration, while sequence reads of non-MOB methylotrophs were 4 times more abundant than MOB in most incubations. The abundances of MOB as well as non-MOB methylotroph sequences correlated tightly with the rate constant (kox) for methane oxidation, indicating that non-MOB methylotrophs might be coupled to MOB and involved in community methane oxidation. In sea ice, where methane concentrations of 82 ± 35.8 nmol kg−1 were found, Methylobacterium (α-Proteobacteria) was the dominant MOB with a relative abundance of 80 %. Total MOB abundances were very low in sea ice, with maximal fractions found at the ice–snow interface (0.1 %), while non-MOB methylotrophs were present in abundances similar to natural seawater communities. The dissimilarities in MOB taxa, methane concentrations, and stable isotope ratios between the sea ice and water column point toward different methane dynamics in the two environments.

Impact Of Synthesis Route on the Water Oxidation Kinetics of Hematite Photoanodes

2020 ◽  
Author(s):  
Camilo A. Mesa ◽  
Ludmilla Steier ◽  
Benjamin Moss ◽  
Laia Francàs ◽  
James E. Thorne ◽  
...  
Keyword(s):  
Oxygen Vacancy ◽  
Reaction Kinetics ◽  
Water Oxidation ◽  
Oxidation Kinetics ◽  
Oxidation Reaction ◽  
Charge Accumulation ◽  
Optical Signals ◽  
Current Voltage ◽  
Voltage Performance ◽  
Kinetics Of

<p><i>Operando</i> spectroelectrochemical analysis is used to determine the water oxidation reaction kinetics for hematite photoanodes prepared using four different synthetic procedures. Whilst these photoanodes exhibit very different current / voltage performance, their underlying water oxidation kinetics are found to be almost invariant. Lower photoanode performance was found to correlate with the observation of optical signals indicative of charge accumulation in mid-gap oxygen vacancy states, indicating these states do not contribute directly to water oxidation.</p>

Extraction of Auditory Information by Modulation of Neuronal Ion Channels

2018 ◽  
pp. 272-300
Author(s):  
Leonard K. Kaczmarek
Keyword(s):  
Ion Channels ◽  
Neuronal Firing ◽  
Auditory Information ◽  
Auditory Neurons ◽  
Complex Sound ◽  
Medial Nucleus ◽  
Rapid Changes ◽  
Genes Encoding ◽  
Kinetics Of ◽  
Trapezoid Body

All neurons express a subset of over seventy genes encoding potassium channel subunits. These channels have been studied in auditory neurons, particularly in the medial nucleus of the trapezoid body. The amplitude and kinetics of various channels in these neurons can be modified by the auditory environment. It has been suggested that such modulation is an adaptation of neuronal firing patterns to specific patterns of auditory inputs. Alternatively, such modulation may allow a group of neurons, all expressing the same set of channels, to represent a variety of responses to the same pattern of incoming stimuli. Such diversity would ensure that a small number of genetically identical neurons could capture and encode many aspects of complex sound, including rapid changes in timing and amplitude. This review covers the modulation of ion channels in the medial nucleus of the trapezoid body and how it may maximize the extraction of auditory information.All neurons express a subset of over seventy genes encoding potassium channel subunits. These channels have been studied in auditory neurons, particularly in the medial nucleus of the trapezoid body. The amplitude and kinetics of various channels in these neurons can be modified by the auditory environment. It has been suggested that such modulation is an adaptation of neuronal firing patterns to specific patterns of auditory inputs. Alternatively, such modulation may allow a group of neurons, all expressing the same set of channels, to represent a variety of responses to the same pattern of incoming stimuli. Such diversity would ensure that a small number of genetically identical neurons could capture and encode many aspects of complex sound, including rapid changes in timing and amplitude. This review covers the modulation of ion channels in the medial nucleus of the trapezoid body and how it may maximize the extraction of auditory information.

Oxidation Kinetics of Fe(II) in a Eutrophic Swiss Lake

1998 ◽  
Vol 32 (19) ◽  
pp. 2990-2996 ◽  
Author(s):  
Lukas Emmenegger ◽  
D. Whitney King ◽  
Laura Sigg ◽  
Barbara Sulzberger
Keyword(s):  
Oxidation Kinetics ◽  
Swiss Lake ◽  
Kinetics Of
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