Phylogenetic Analysis of New Isolates of Cucumber mosaic virus from Iran on the Basis of Different Genomic Regions

ABSTRACTThe complete genome sequence ofCucumber mosaic virusstrain K was determined by deep RNA sequencing. The tripartite genome consists of a 3,382-nucleotide (nt) RNA1, a 3,050-nt RNA2, and a 2,218-nt RNA3 segment. Phylogenetic analysis placed RNA1 and RNA2 in subgroup IB. However, RNA3 grouped with subgroup IA isolates, indicating a likely recombination event.

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PHYLOGENETIC ANALYSIS OF TWO UKRAINIAN ISOLATES OF CUCUMBER MOSAIC VIRUS FROM GLADIOLI GROWN UNDER DIFFERENT AGROECOLOGICAL CONDITIONS

The Journal Agriculture and Forestry ◽

10.17707/agricultforest.67.4.05 ◽

2021 ◽

Vol 67 (4) ◽

Author(s):

Roksolana SOVINSKA ◽

Alina DUNICH ◽

Lidiya MISHCHENKO

Keyword(s):

Phylogenetic Analysis ◽

Cucumber Mosaic Virus ◽

Mosaic Virus

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Detection, Differentiation and Phylogenetic Analysis of Cucumber Mosaic Virus Isolates from Cucurbits in the Northwest Region of Iran

Virus Genes ◽

10.1007/s11262-005-6912-2 ◽

2006 ◽

Vol 32 (3) ◽

pp. 277-288 ◽

Cited By ~ 23

Author(s):

Nemat Sokhandan Bashir ◽

Mohammad Rasaei Kalhor ◽

Shaheen Nourinejhad Zarghani

Keyword(s):

Phylogenetic Analysis ◽

Cucumber Mosaic Virus ◽

Mosaic Virus ◽

Northwest Region ◽

Virus Isolates

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Molecular Detection and Phylogenetic Analysis of Cucumber Mosaic Virus Infecting Bhut Jolokia (Capsicum chinense Jacq.) of Assam

International Journal of Economic Plants ◽

10.23910/ijep/2019.6.3.0320 ◽

2019 ◽

Vol 6 (3) ◽

pp. 126-129

Author(s):

Munmi Borah ◽

◽

R. Gowtham Kumar ◽

Sundaresha Siddappa ◽

◽

...

Keyword(s):

Phylogenetic Analysis ◽

Cucumber Mosaic Virus ◽

Mosaic Virus ◽

Molecular Detection ◽

Capsicum Chinense ◽

Bhut Jolokia

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Molecular characterization of Cucumber mosaic virus infection in chilli (Capsicum annuum L.) and its phylogenetic analysis

International Journal of Chemical Studies ◽

10.22271/chemi.2020.v8.i4aj.10099 ◽

2020 ◽

Vol 8 (4) ◽

pp. 2967-2970

Author(s):

Rajamanickam S ◽

Nakkeeran S

Keyword(s):

Phylogenetic Analysis ◽

Virus Infection ◽

Cucumber Mosaic Virus ◽

Mosaic Virus ◽

Molecular Characterization ◽

Capsicum Annuum ◽

Capsicum Annuum L ◽

Cucumber Mosaic Virus Infection ◽

Mosaic Virus Infection

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Molecular Population Genetics of Cucumber Mosaic Virus in California: Evidence for Founder Effects and Reassortment

Journal of Virology ◽

10.1128/jvi.78.12.6666-6675.2004 ◽

2004 ◽

Vol 78 (12) ◽

pp. 6666-6675 ◽

Cited By ~ 64

Author(s):

Han-Xin Lin ◽

Luis Rubio ◽

Ashleigh B. Smythe ◽

Bryce W. Falk

Keyword(s):

Genetic Diversity ◽

Population Genetics ◽

Cucumber Mosaic Virus ◽

Mosaic Virus ◽

Population Analysis ◽

Single Strand Conformation Polymorphism ◽

Founder Effects ◽

Coding Regions ◽

Nontranslated Region ◽

Genomic Regions

ABSTRACT The structure and genetic diversity of a California Cucumber mosaic virus (CMV) population was assessed by single-strand conformation polymorphism and nucleotide sequence analyses of genomic regions 2b, CP, MP, and the 3′ nontranslated region of RNA3. The California CMV population exhibited low genetic diversity and was composed of one to three predominant haplotypes and a large number of minor haplotypes for specific genomic regions. Extremely low diversity and close evolutionary relationships among isolates in a subpopulation suggested that founder effects might play a role in shaping the genetic structure. Phylogenetic analysis indicated a naturally occurring reassortant between subgroup IA and IB isolates and potential reassortants between subgroup IA isolates, suggesting that genetic exchange by reassortment contributed to the evolution of the California CMV population. Analysis of various population genetics parameters and distribution of synonymous and nonsynonymous mutations revealed that different coding regions and even different parts of coding regions were under different evolutionary constraints, including a short region of the 2b gene for which evidence suggests possible positive selection.

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