Detection, Differentiation and Phylogenetic Analysis of Cucumber Mosaic Virus Isolates from Cucurbits in the Northwest Region of Iran

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Mohammad Rasaei Kalhor ◽  
Shaheen Nourinejhad Zarghani
PLoS ONE ◽  
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Tomohide NATSUAKI ◽  
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Lara-Simone Pretorius ◽  
Louise S. Shuey ◽  
Ekaterina Nowak ◽  
Peer M. Schenk

ABSTRACTThe complete genome sequence ofCucumber mosaic virusstrain K was determined by deep RNA sequencing. The tripartite genome consists of a 3,382-nucleotide (nt) RNA1, a 3,050-nt RNA2, and a 2,218-nt RNA3 segment. Phylogenetic analysis placed RNA1 and RNA2 in subgroup IB. However, RNA3 grouped with subgroup IA isolates, indicating a likely recombination event.


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