scholarly journals Label-free protein quantification on tandem mass spectra acquired in a data-independent mode provides accurate measurements over five orders of concentration magnitude in complex matrices

2011 ◽  
Vol 1 (2) ◽  
Author(s):  
Alexander Scherl ◽  
HuiSong Pak ◽  
Carla Pasquarello
Keyword(s):  
Mass Spectra ◽  
Protein Quantification ◽  
Tandem Mass ◽  
Label Free ◽  
Complex Matrices ◽  
Free Protein ◽  
Tandem Mass Spectra ◽  
Independent Mode

scholarly journals Clustering and Filtering Tandem Mass Spectra Acquired in Data-Independent Mode

2013 ◽  
Vol 24 (12) ◽  
pp. 1862-1871 ◽  
Author(s):  
Huisong Pak ◽  
Frederic Nikitin ◽  
Florent Gluck ◽  
Frederique Lisacek ◽  
Alexander Scherl ◽  
...  
Keyword(s):  
Mass Spectra ◽  
Tandem Mass ◽  
Tandem Mass Spectra ◽  
Independent Mode

scholarly journals Analysis of Tandem Mass Spectra by FTMS for Improved Large-Scale Proteomics with Superior Protein Quantification

2010 ◽  
Vol 82 (1) ◽  
pp. 316-322 ◽  
Author(s):  
Graeme C. McAlister ◽  
Doug Phanstiel ◽  
Craig D. Wenger ◽  
M. Violet Lee ◽  
Joshua J. Coon
Keyword(s):  
Mass Spectra ◽  
Large Scale ◽  
Protein Quantification ◽  
Tandem Mass ◽  
Tandem Mass Spectra

MS_Piano: A Software Tool for Annotating Peaks in CID Tandem Mass Spectra of Peptides and N-Glycopeptides

2021 ◽  
Author(s):  
Xiaoyu Yang ◽  
Pedatsur Neta ◽  
Yuri A. Mirokhin ◽  
Dmitrii V. Tchekhovskoi ◽  
Concepcion A. Remoroza ◽  
...  
Keyword(s):  
Mass Spectra ◽  
Software Tool ◽  
Tandem Mass ◽  
Tandem Mass Spectra

Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags

2010 ◽  
Vol 73 (4) ◽  
pp. 769-777 ◽  
Author(s):  
Loïc Dayon ◽  
Carla Pasquarello ◽  
Christine Hoogland ◽  
Jean-Charles Sanchez ◽  
Alexander Scherl
Keyword(s):  
Mass Spectra ◽  
High Energy ◽  
Tandem Mass ◽  
Peptide Quantification ◽  
Tandem Mass Spectra ◽  
Isobaric Tags

scholarly journals A Computational Framework for Heparan Sulfate Sequencing Using High-resolution Tandem Mass Spectra

2014 ◽  
Vol 13 (9) ◽  
pp. 2490-2502 ◽  
Author(s):  
Han Hu ◽  
Yu Huang ◽  
Yang Mao ◽  
Xiang Yu ◽  
Yongmei Xu ◽  
...  
Keyword(s):  
High Resolution ◽  
Heparan Sulfate ◽  
Mass Spectra ◽  
Tandem Mass ◽  
Computational Framework ◽  
Tandem Mass Spectra
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