Overview of methods of reverse engineering of gene regulatory networks: Boolean and Bayesian networks

Biopolymers and Cell ◽

10.7124/bc.000036 ◽

2012 ◽

Vol 28 (3) ◽

pp. 163-170 ◽

Author(s):

A. O. Frolova

Keyword(s):

Reverse Engineering ◽

Bayesian Networks ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory

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Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks

Bioinformatics ◽

10.1093/bioinformatics/btl391 ◽

2006 ◽

Vol 22 (20) ◽

pp. 2523-2531 ◽

Author(s):

A. V. Werhli ◽

M. Grzegorczyk ◽

D. Husmeier

Keyword(s):

Reverse Engineering ◽

Bayesian Networks ◽

Gene Regulatory Networks ◽

Comparative Evaluation ◽

Regulatory Networks ◽

Gaussian Models ◽

Gene Regulatory ◽

Graphical Gaussian Models ◽

Graphical Gaussian

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Reverse Engineering of Gene Regulatory Networks Combining Dynamic Bayesian Networks and Prior Biological Knowledge

Computational Science and Its Applications – ICCSA 2018 - Lecture Notes in Computer Science ◽

10.1007/978-3-319-95162-1_22 ◽

2018 ◽

pp. 323-336 ◽

Author(s):

Mariana C. de Souza ◽

Carlos H. A. Higa

Keyword(s):

Reverse Engineering ◽

Bayesian Networks ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Dynamic Bayesian Networks ◽

Biological Knowledge ◽

Prior Biological Knowledge ◽

Gene Regulatory

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Reverse engineering gene regulatory networks

IEEE Signal Processing Magazine ◽

10.1109/msp.2008.930647 ◽

2009 ◽

Vol 26 (1) ◽

pp. 76-97 ◽

Author(s):

Yufei Huang ◽

I. Tienda-Luna ◽

Yufeng Wang

Keyword(s):

Reverse Engineering ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory

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A Topology-Aware Evolutionary Algorithm for Reverse-Engineering Gene Regulatory Networks

Large-Scale Computing ◽

10.1002/9781118130506.ch8 ◽

2012 ◽

pp. 141-162

Author(s):

Martin Swain ◽

Camille Coti ◽

Johannes Mandel ◽

Werner Dubitzky

Keyword(s):

Reverse Engineering ◽

Evolutionary Algorithm ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory

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Comparing Grid Computing Solutions for Reverse-Engineering Gene Regulatory Networks

Computational Science – ICCS 2008 - Lecture Notes in Computer Science ◽

10.1007/978-3-540-69384-0_16 ◽

2008 ◽

pp. 106-115

Author(s):

Martin Swain ◽

Johannes J. Mandel ◽

Werner Dubitzky

Keyword(s):

Reverse Engineering ◽

Grid Computing ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory

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Parallel Computing Algorithms for Reverse-Engineering and Analysis of Genome-Wide Gene Regulatory Networks from Gene Expression Profiles

2010 Ninth International Workshop on Parallel and Distributed Methods in Verification, and Second International Workshop on High Performance Computational Systems Biology ◽

10.1109/pdmc-hibi.2010.20 ◽

2010 ◽

Author(s):

Vincenzo Belcastro ◽

Diego di Bernardo ◽

Francesco Gregoretti ◽

Gennaro Oliva

Keyword(s):

Gene Expression ◽

Parallel Computing ◽

Reverse Engineering ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Expression Profiles ◽

Gene Expression Profiles ◽

Genome Wide ◽

Gene Regulatory

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A Time-Delayed Information-Theoretic Approach to the Reverse Engineering of Gene Regulatory Networks Using Apache Spark

2017 IEEE 15th Intl Conf on Dependable, Autonomic and Secure Computing, 15th Intl Conf on Pervasive Intelligence and Computing, 3rd Intl Conf on Big Data Intelligence and Computing and Cyber Science and Technology Congress(DASC/PiCom/DataCom/CyberSciTech) ◽

10.1109/dasc-picom-datacom-cyberscitec.2017.179 ◽

2017 ◽

Author(s):

Yasser Abduallah ◽

Jason T. L. Wang

Keyword(s):

Reverse Engineering ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Apache Spark ◽

Theoretic Approach ◽

Information Theoretic ◽

Delayed Information ◽

Gene Regulatory ◽

Information Theoretic Approach

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Reverse Engineering Gene Regulatory Networks Related to Quorum Sensing in the Plant Pathogen Pectobacterium atrosepticum

Methods in Molecular Biology - Computational Biology ◽

10.1007/978-1-60761-842-3_17 ◽

2010 ◽

pp. 253-281 ◽

Author(s):

Kuang Lin ◽

Dirk Husmeier ◽

Frank Dondelinger ◽

Claus D. Mayer ◽

Hui Liu ◽

...

Keyword(s):

Quorum Sensing ◽

Reverse Engineering ◽

Gene Regulatory Networks ◽

Plant Pathogen ◽

Regulatory Networks ◽

Pectobacterium Atrosepticum ◽

Gene Regulatory

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A Hybrid Methodology for the Reverse Engineering of Gene Regulatory Networks

2020 IEEE Congress on Evolutionary Computation (CEC) ◽

10.1109/cec48606.2020.9185866 ◽

2020 ◽

Author(s):

Abhinandan Khan ◽

Ankita Dutta ◽

Goutam Saha ◽

Rajat Kumar Pal

Keyword(s):

Reverse Engineering ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Gene Regulatory ◽

Hybrid Methodology

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Ensemble of Elman neural networks and support vector machines for reverse engineering of gene regulatory networks

Applied Soft Computing ◽

10.1016/j.asoc.2010.05.014 ◽

2011 ◽

Vol 11 (2) ◽

pp. 1718-1726 ◽

Author(s):

S.I. Ao ◽

V. Palade

Keyword(s):

Neural Networks ◽

Support Vector Machines ◽

Reverse Engineering ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Support Vector ◽

Vector Machines ◽

Gene Regulatory

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