scholarly journals Genome-wide identification and expression analysis along the leaf developmental gradient of the sigma factor gene family in foxtail millet (Setaria italica)

2016 ◽  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Sigma Factor ◽  
Foxtail Millet ◽  
Setaria Italica ◽  
Factor Gene ◽  
Genome Wide ◽  
Developmental Gradient

scholarly journals Genome-wide identification and in silico characterization of chitinase gene family in Foxtail millet (Setaria italica)

2020 ◽  
Author(s):  
Motukuri S. R. Krishna ◽  
Nerella Dheeraj ◽  
Bathuru Jayasree ◽  
Chodisetty Bhavya ◽  
Nallamothu Jaswanthi
Keyword(s):  
Gene Family ◽  
In Silico ◽  
Foxtail Millet ◽  
Chitinase Gene ◽  
Setaria Italica ◽  
Genome Wide ◽  
In Silico Characterization

Genome-wide identification, characterization and expression analysis of the auxin response factor gene family in Vitis vinifera

2014 ◽  
Vol 33 (8) ◽  
pp. 1365-1375 ◽  
Author(s):  
Sibao Wan ◽  
Weili Li ◽  
Yueying Zhu ◽  
Zhanmin Liu ◽  
Weidong Huang ◽  
...  
Keyword(s):  
Vitis Vinifera ◽  
Gene Family ◽  
Expression Analysis ◽  
Auxin Response Factor ◽  
Response Factor ◽  
Auxin Response ◽  
Factor Gene ◽  
Genome Wide ◽  
Auxin Response Factor Gene

Genome-wide characterization of the SiDof gene family in foxtail millet (Setaria italica)

Biosystems ◽  
2017 ◽  
Vol 151 ◽  
pp. 27-33 ◽  
Author(s):  
Li Zhang ◽  
Baoling Liu ◽  
Gewen Zheng ◽  
Aiying Zhang ◽  
Runzhi Li
Keyword(s):  
Gene Family ◽  
Foxtail Millet ◽  
Setaria Italica ◽  
Genome Wide

scholarly journals Genome-wide identification of the ARF (auxin response factor) gene family in peach and their expression analysis

2020 ◽  
Vol 47 (6) ◽  
pp. 4331-4344 ◽  
Author(s):  
Donghui Diao ◽  
Xiao Hu ◽  
Dan Guan ◽  
Wei Wang ◽  
Haiqing Yang ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Auxin Response Factor ◽  
Response Factor ◽  
Auxin Response ◽  
Factor Gene ◽  
Genome Wide ◽  
Auxin Response Factor Gene

scholarly journals Genome-wide identification, characterization, and expression analysis of superoxide dismutase (SOD) genes in foxtail millet (Setaria italica L.)

3 Biotech ◽  
2018 ◽  
Vol 8 (12) ◽  
Author(s):  
Tao Wang ◽  
Hui Song ◽  
Baohong Zhang ◽  
Quanwei Lu ◽  
Zhen Liu ◽  
...  
Keyword(s):  
Superoxide Dismutase ◽  
Expression Analysis ◽  
Foxtail Millet ◽  
Setaria Italica ◽  
Genome Wide

scholarly journals Genome-wide identification of cyclin-dependent kinase (CDK) genes affecting adipocyte differentiation in cattle

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Cuili Pan ◽  
Zhaoxiong Lei ◽  
Shuzhe Wang ◽  
Xingping Wang ◽  
Dawei Wei ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Adipocyte Differentiation ◽  
Bos Taurus ◽  
Adipogenic Differentiation ◽  
Critical Role ◽  
Bos Indicus ◽  
Specific Expression ◽  
Genome Wide ◽  
A Genome

Abstract Background Cyclin-dependent kinases (CDKs) are protein kinases regulating important cellular processes such as cell cycle and transcription. Many CDK genes also play a critical role during adipogenic differentiation, but the role of CDK gene family in regulating bovine adipocyte differentiation has not been studied. Therefore, the present study aims to characterize the CDK gene family in bovine and study their expression pattern during adipocyte differentiation. Results We performed a genome-wide analysis and identified a number of CDK genes in several bovine species. The CDK genes were classified into 8 subfamilies through phylogenetic analysis. We found that 25 bovine CDK genes were distributed in 16 different chromosomes. Collinearity analysis revealed that the CDK gene family in Bos taurus is homologous with Bos indicus, Hybrid-Bos taurus, Hybrid Bos indicus, Bos grunniens and Bubalus bubalis. Several CDK genes had higher expression levels in preadipocytes than in differentiated adipocytes, as shown by RNA-seq analysis and qPCR, suggesting a role in the growth of emerging lipid droplets. Conclusion In this research, 185 CDK genes were identified and grouped into eight distinct clades in Bovidae, showing extensively homology. Global expression analysis of different bovine tissues and specific expression analysis during adipocytes differentiation revealed CDK4, CDK7, CDK8, CDK9 and CDK14 may be involved in bovine adipocyte differentiation. The results provide a basis for further study to determine the roles of CDK gene family in regulating adipocyte differentiation, which is beneficial for beef quality improvement.

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