scholarly journals Responses of microbial community from tropical pristine coastal soil to crude oil contamination

PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e1733 ◽  
Author(s):  
Daniel Morais ◽  
Victor Pylro ◽  
Ian M. Clark ◽  
Penny R. Hirsch ◽  
Marcos R. Tótola

Brazilian offshore crude oil exploration has increased after the discovery of new reservoirs in the region known as pré-sal, in a depth of 7.000 m under the water surface. Oceanic islands near these areas represent sensitive environments, where changes in microbial communities due oil contamination could stand for the loss of metabolic functions, with catastrophic effects to the soil services provided from these locations. This work aimed to evaluate the effect of petroleum contamination on microbial community shifts (Archaea, Bacteria and Fungi) from Trindade Island coastal soils. Microcosms were assembled and divided in two treatments, control and contaminated (weathered crude oil at the concentration of 30 g kg−1), in triplicate. Soils were incubated for 38 days, with CO2measurements every four hours. After incubation, the total DNA was extracted, purified and submitted for target sequencing of 16S rDNA, for Bacteria and Archaea domains and Fungal ITS1 region, using the Illumina MiSeq platform. Three days after contamination, the CO2emission rate peaked at more than 20 × the control and the emissions remained higher during the whole incubation period. Microbial alpha-diversity was reduced for contaminated-samples. Fungal relative abundance of contaminated samples was reduced to almost 40% of the total observed species. Taxonomy comparisons showed rise of the Actinobacteria phylum, shifts in several Proteobacteria classes and reduction of the Archaea class Nitrososphaerales. This is the first effort in acquiring knowledge concerning the effect of crude oil contamination in soils of a Brazilian oceanic island. This information is important to guide any future bioremediation strategy that can be required.

2016 ◽  
Author(s):  
Daniel Morais ◽  
Victor Pylro ◽  
Ian M Clark ◽  
Penny R Hirsch ◽  
Marcos Tótola

Brazilian offshore crude oil exploration has increased after the discovery of new reservoirs in the region known as pré-sal, in a depth of 7.000 m under the water surface. Oceanic Islands near these areas represent sensitive environments, where changes in microbial communities due to oil contamination could cause the loss of metabolic functions, with catastrophic effects to the soil services provided from these locations. This work aimed to evaluate the effect of petroleum contamination on microbial community shifts (Archaea, Bacteria and Fungi) from Trindade Island coastal soils. Microcosms were assembled and divided into two treatments, control and contaminated (weathered crude oil at the concentration of 30 g kg-1), in triplicate. Soils were incubated for 38 days, with CO2 measurements every four hours. After incubation, the total DNA was extracted, purified and submitted for high-throughput target sequencing of 16S rDNA, for Bacteria and Archaea domains and Fungal ITS1 region, using the Illumina MiSeq platform. Three days after contamination, the CO2 emission rate peaked at more than 20x the control and the emissions remained higher during the whole incubation period. Microbial alpha-diversity was reduced for contaminated-samples. Fungal relative abundance of contaminated samples was reduced to almost 40% of the total observed species. Taxonomy comparisons showed a rise of the Actinobacteria phylum, shifts in several Proteobacteria classes and reduction of the Archaea class Nitrososphaerales in oil contaminated microcosms. This is the first effort in acquiring knowledge concerning the effect of crude oil contamination in soils of a Brazilian oceanic island. This information is important to guide any future bioremediation strategy that may be required.


2016 ◽  
Author(s):  
Daniel Morais ◽  
Victor Pylro ◽  
Ian M Clark ◽  
Penny R Hirsch ◽  
Marcos Tótola

Brazilian offshore crude oil exploration has increased after the discovery of new reservoirs in the region known as pré-sal, in a depth of 7.000 m under the water surface. Oceanic Islands near these areas represent sensitive environments, where changes in microbial communities due to oil contamination could cause the loss of metabolic functions, with catastrophic effects to the soil services provided from these locations. This work aimed to evaluate the effect of petroleum contamination on microbial community shifts (Archaea, Bacteria and Fungi) from Trindade Island coastal soils. Microcosms were assembled and divided into two treatments, control and contaminated (weathered crude oil at the concentration of 30 g kg-1), in triplicate. Soils were incubated for 38 days, with CO2 measurements every four hours. After incubation, the total DNA was extracted, purified and submitted for high-throughput target sequencing of 16S rDNA, for Bacteria and Archaea domains and Fungal ITS1 region, using the Illumina MiSeq platform. Three days after contamination, the CO2 emission rate peaked at more than 20x the control and the emissions remained higher during the whole incubation period. Microbial alpha-diversity was reduced for contaminated-samples. Fungal relative abundance of contaminated samples was reduced to almost 40% of the total observed species. Taxonomy comparisons showed a rise of the Actinobacteria phylum, shifts in several Proteobacteria classes and reduction of the Archaea class Nitrososphaerales in oil contaminated microcosms. This is the first effort in acquiring knowledge concerning the effect of crude oil contamination in soils of a Brazilian oceanic island. This information is important to guide any future bioremediation strategy that may be required.


2015 ◽  
Author(s):  
Daniel Morais ◽  
Victor Pylro ◽  
Ian M Clark ◽  
Penny R Hirsch ◽  
Marcos Tótola

Crude oil is still the dominant energy source in Brazil and that the consumption keeps rising since 2013, being responsible for 2.2% of the world’s energy consumption. The recent discovery of crude oil reservoirs at the Espirito Santo basin, Campos basin and Santos basin, can be considered as an excellent opportunity to supply the country’s economic and energetic demands. However, albeit the opportunity these crude oil reservoirs represent, offshore exploration offers risks to the microbiota and the whole sea life, as petroleum hydrocarbons are toxic, mutagenic, teratogenic and carcinogenic. Microbes are responsible for nutrient cycling and can degrade even very recalcitrant hydrocarbons. This work aimed to evaluate the microbial community shift (Archaea, Bacteria and Fungi) from Trindade Island coastal environment under petroleum contamination. Microcosms were assembled using Trindade Island coastal soil to create two treatments, control and contaminated (weathered crude oil at 30 g kg-1). Soils were incubated during 38 days with CO2 measurements every four hours. Total DNA was extracted, purified and submited for sequencing of 16s rRNA gene, for Bacteria and Archaea domains and Fungal ITS1 region using Illumina MiSeq platform. We compared alpha diversity, beta diversity and taxonomic shifts between controls and contaminated samples. Three days after contamination, emission rate peaked at more than 20x the control and the emissions remained higer during the whole incubation period. Microbial alpha diversity was reduced for contaminated-samples. Fungi community of contaminated samples was reduced to almost 40% of the observed species. Taxonomy comparisons showed rise of the Actinobacteria phylum and reduction of the Archaea Candidatus nitrosphaere.


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