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Author(s):  
Matthias Dreydoppel ◽  
Roman J. Lichtenecker ◽  
Mikael Akke ◽  
Ulrich Weininger

AbstractAromatic side chains are attractive probes of protein dynamic, since they are often key residues in enzyme active sites and protein binding sites. Dynamic processes on microsecond to millisecond timescales can be studied by relaxation dispersion experiments that attenuate conformational exchange contributions to the transverse relaxation rate by varying the refocusing frequency of applied radio-frequency fields implemented as either CPMG pulse trains or continuous spin-lock periods. Here we present an aromatic 1H R1ρ relaxation dispersion experiment enabling studies of two to three times faster exchange processes than achievable by existing experiments for aromatic side chains. We show that site-specific isotope labeling schemes generating isolated 1H–13C spin pairs with vicinal 2H–12C moieties are necessary to avoid anomalous relaxation dispersion profiles caused by Hartmann–Hahn matching due to the 3JHH couplings and limited chemical shift differences among 1H spins in phenylalanine, tyrosine and the six-ring moiety of tryptophan. This labeling pattern is sufficient in that remote protons do not cause additional complications. We validated the approach by measuring ring-flip kinetics in the small protein GB1. The determined rate constants, kflip, agree well with previous results from 13C R1ρ relaxation dispersion experiments, and yield 1H chemical shift differences between the two sides of the ring in good agreement with values measured under slow-exchange conditions. The aromatic1H R1ρ relaxation dispersion experiment in combination with the site-selective 1H–13C/2H–12C labeling scheme enable measurement of exchange rates up to kex = 2kflip = 80,000 s–1, and serve as a useful complement to previously developed 13C-based methods.


Author(s):  
Maximilian Gram ◽  
Daniel Gensler ◽  
Patrick Winter ◽  
Michael Seethaler ◽  
Paula Anahi Arias-Loza ◽  
...  

Abstract Purpose T1ρ dispersion quantification can potentially be used as a cardiac magnetic resonance index for sensitive detection of myocardial fibrosis without the need of contrast agents. However, dispersion quantification is still a major challenge, because T1ρ mapping for different spin lock amplitudes is a very time consuming process. This study aims to develop a fast and accurate T1ρ mapping sequence, which paves the way to cardiac T1ρ dispersion quantification within the limited measurement time of an in vivo study in small animals. Methods A radial spin lock sequence was developed using a Bloch simulation-optimized sampling pattern and a view-sharing method for image reconstruction. For validation, phantom measurements with a conventional sampling pattern and a gold standard sequence were compared to examine T1ρ quantification accuracy. The in vivo validation of T1ρ mapping was performed in N = 10 mice and in a reproduction study in a single animal, in which ten maps were acquired in direct succession. Finally, the feasibility of myocardial dispersion quantification was tested in one animal. Results The Bloch simulation-based sampling shows considerably higher image quality as well as improved T1ρ quantification accuracy (+ 56%) and precision (+ 49%) compared to conventional sampling. Compared to the gold standard sequence, a mean deviation of − 0.46 ± 1.84% was observed. The in vivo measurements proved high reproducibility of myocardial T1ρ mapping. The mean T1ρ in the left ventricle was 39.5 ± 1.2 ms for different animals and the maximum deviation was 2.1% in the successive measurements. The myocardial T1ρ dispersion slope, which was measured for the first time in one animal, could be determined to be 4.76 ± 0.23 ms/kHz. Conclusion This new and fast T1ρ quantification technique enables high-resolution myocardial T1ρ mapping and even dispersion quantification within the limited time of an in vivo study and could, therefore, be a reliable tool for improved tissue characterization.


ChemPhysChem ◽  
2021 ◽  
Author(s):  
Stephen DeVience ◽  
Mason Greer ◽  
Soumyajit Mandal ◽  
Matthew S. Rosen
Keyword(s):  

2021 ◽  
Author(s):  
Feng Wang ◽  
Tadashi Otsuka ◽  
Keiko Takahashi ◽  
Chikage Narui ◽  
Daniel C. Colvin ◽  
...  

2021 ◽  
Vol 75 ◽  
pp. 141-148
Author(s):  
Qianfeng Wang ◽  
Hong Xiao ◽  
Xuchen Yu ◽  
Huimin Lin ◽  
Baofeng Yang ◽  
...  

Author(s):  
Maximilian Gram ◽  
Michael Seethaler ◽  
Daniel Gensler ◽  
Johannes Oberberger ◽  
Peter M. Jakob ◽  
...  

2020 ◽  
Vol 1 (2) ◽  
pp. 187-195
Author(s):  
Kathrin Aebischer ◽  
Nino Wili ◽  
Zdeněk Tošner ◽  
Matthias Ernst

Abstract. Radio-frequency (rf) field inhomogeneity is a common problem in NMR which leads to non-ideal rotations of spins in parts of the sample. Often, a physical volume restriction of the sample is used to reduce the effects of rf-field inhomogeneity, especially in solid-state NMR where spacers are inserted to reduce the sample volume to the centre of the coil. We show that band-selective pulses in the spin-lock frame can be used to apply B1-field selective inversions to spins that experience selected parts of the rf-field distribution. Any frequency band-selective pulse can be used for this purpose, but we chose the family of I-BURP pulses (Geen and Freeman, 1991) for the measurements demonstrated here. As an example, we show that the implementation of such pulses improves homonuclear frequency-switched Lee–Goldburg decoupling in solid-state NMR.


2020 ◽  
Author(s):  
Kathrin Aebischer ◽  
Nino Wili ◽  
Zdeněk Tošner ◽  
Matthias Ernst

Abstract. Radio-frequency (rf) field inhomogeneity is a common problem in NMR which leads to non-ideal rotations of spins in parts of the sample. Often, a physical volume restriction of the sample is used to reduce the effects of rf-field inhomogeneity especially in solid-state NMR where spacers are inserted to reduce the sample volume to the centre of the coil. We show that band-selective pulses in the spin-lock frame can be used to apply B1-field selective inversions to spins that experience selected parts of the rf-field distribution. Any frequency band-selective pulse can be used for this purpose but we chose the family of I-BURP pulses (H. Geen, R. Freeman, Band-Selective Radiofrequency Pulses, J. Magn. Reson. 93 (1991) 93–141) for the measurements demonstrated here. As an example, we show that the implementation of such pulses improves homonuclear frequency-switched Lee-Goldburg decoupling in solid-state NMR.


2020 ◽  
Vol 84 (6) ◽  
pp. 3157-3171
Author(s):  
Jian Hou ◽  
Vincent Wai‐Sun Wong ◽  
Baiyan Jiang ◽  
Yi‐Xiang Wang ◽  
Grace Lai‐Hung Wong ◽  
...  

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