ABSTRACTRestriction digestion of foreign DNA is one of the key biological barriers against genetic transformation in microorganisms. To establish a high-efficiency transformation protocol in the model cyanobacterium,Synechocystissp. strain PCC 6803 (Synechocystis6803), we investigated the effects of premethylation of foreign DNA on the integrative transformation of this strain. In this study, two type II methyltransferase-encoding genes, i.e.,sll0729(geneM) andslr0214(geneC), were cloned from the chromosome ofSynechocystis6803 and expressed inEscherichia coliharboring an integration plasmid. After premethylation treatment inE. coli, the integration plasmid was extracted and used for transformation ofSynechocystis6803. The results showed that although expression of methyltransferase M had little impact on the transformation ofSynechocystis6803, expression of methyltransferase C resulted in 11- to 161-fold-higher efficiency in the subsequent integrative transformation ofSynechocystis6803. Effective expression of methyltransferase C, which could be achieved by optimizing the 5′ untranslated region, was critical to efficient premethylation of the donor DNA and thus high transformation efficiency inSynechocystis6803. Since premethylating foreign DNA prior to transformingSynechocystisavoids changing the host genetic background, the study thus provides an improved method for high-efficiency integrative transformation ofSynechocystis6803.