population decoding
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2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Runnan Cao ◽  
Xin Li ◽  
Nicholas J. Brandmeir ◽  
Shuo Wang

AbstractFaces are salient social stimuli that attract a stereotypical pattern of eye movement. The human amygdala and hippocampus are involved in various aspects of face processing; however, it remains unclear how they encode the content of fixations when viewing faces. To answer this question, we employed single-neuron recordings with simultaneous eye tracking when participants viewed natural face stimuli. We found a class of neurons in the human amygdala and hippocampus that encoded salient facial features such as the eyes and mouth. With a control experiment using non-face stimuli, we further showed that feature selectivity was specific to faces. We also found another population of neurons that differentiated saccades to the eyes vs. the mouth. Population decoding confirmed our results and further revealed the temporal dynamics of face feature coding. Interestingly, we found that the amygdala and hippocampus played different roles in encoding facial features. Lastly, we revealed two functional roles of feature-selective neurons: 1) they encoded the salient region for face recognition, and 2) they were related to perceived social trait judgments. Together, our results link eye movement with neural face processing and provide important mechanistic insights for human face perception.


2021 ◽  
Author(s):  
Charles R Heller ◽  
Stephen V David

Rapidly developing technology for large scale neural recordings has allowed researchers to measure the activity of hundreds to thousands of neurons at single cell resolution in vivo. Neural decoding analyses are a widely used tool used for investigating what information is represented in this complex, high-dimensional neural population activity. Most population decoding methods assume that correlated activity between neurons has been estimated accurately. In practice, this requires large amounts of data, both across observations and across neurons. Unfortunately, most experiments are fundamentally constrained by practical variables that limit the number of times the neural population can be observed under a single stimulus and/or behavior condition. Therefore, new analytical tools are required to study neural population coding while taking into account these limitations. Here, we present a simple and interpretable method for dimensionality reduction that allows neural decoding metrics to be calculated reliably, even when experimental trial numbers are limited. We illustrate the method using simulations and compare its performance to standard approaches for dimensionality reduction and decoding by applying it to single-unit electrophysiological data collected from auditory cortex.


2020 ◽  
Author(s):  
Yoon Bai ◽  
Spencer Chen ◽  
Yuzhi Chen ◽  
Wilson S. Geisler ◽  
Eyal Seidemann

AbstractVisual systems evolve to process the stimuli that arise in the organism’s natural environment and hence to fully understand the neural computations in the visual system it is important to measure behavioral and neural responses to natural visual stimuli. Here we measured psychometric and neurometric functions and thresholds in the macaque monkey for detection of a windowed sine-wave target in uniform backgrounds and in natural backgrounds of various contrasts. The neurometric functions and neurometric thresholds were obtained by near-optimal decoding of voltage-sensitive-dye-imaging (VSDI) responses at the retinotopic scale in primary visual cortex (V1). The results were compared with previous human psychophysical measurements made under the same conditions. We found that human and macaque behavioral thresholds followed the generalized Weber’s law as function of contrast, and that both the slopes and the intercepts of the threshold functions match each other up to a single scale factor. We also found that the neurometric thresholds followed the generalized Weber’s law and that the neurometric slopes and intercepts matched the behavioral slopes and intercepts up to a single scale factor. We conclude that human and macaque ability to detect targets in natural backgrounds are affected in the same way by background contrast, that these effects are consistent with population decoding at the retinotopic scale by down-stream circuits, and that the macaque monkey is an appropriate animal model for gaining an understanding of the neural mechanisms in humans for detecting targets in natural backgrounds. Finally, we discuss limitations of the current study and potential next steps.New & NoteworthyWe measured macaque detection performance in natural images and compared their performance to the detection sensitivity of neurophysiological responses recorded in the primary visual cortex (V1), and to the performance of human subjects. We found that (i) human and macaque behavioral performances are in quantitative agreement, (ii) are consistent with near-optimal decoding of V1 population responses.SignificanceNatural selection guarantees that neural computations will be matched to the task-relevant natural stimuli in the organism’s environment, and thus it is crucial to measure behavioral and neural responses to natural stimuli. We measured the ability of macaque monkeys to detect targets in natural images and compared their performance to neurophysiological responses recorded in the macaque’s primary visual cortex (V1), and to the performance of humans under the same conditions. We found that (i) human and macaque behavioral performance are in quantitative agreement, (ii) are consistent with near-optimal population decoding of V1 neural responses, and (iii) that the macaque monkey is an appropriate animal model for gaining understanding of the neural mechanisms in humans for detecting targets in natural backgrounds.


eNeuro ◽  
2018 ◽  
Vol 5 (6) ◽  
pp. ENEURO.0336-18.2018 ◽  
Author(s):  
Tristan A. Chaplin ◽  
Maureen A. Hagan ◽  
Benjamin J. Allitt ◽  
Leo L. Lui

2018 ◽  
Vol 30 (8) ◽  
pp. 2175-2209 ◽  
Author(s):  
Shizhao Liu ◽  
Andres D. Grosmark ◽  
Zhe Chen

It has been suggested that reactivation of previously acquired experiences or stored information in declarative memories in the hippocampus and neocortex contributes to memory consolidation and learning. Understanding memory consolidation depends crucially on the development of robust statistical methods for assessing memory reactivation. To date, several statistical methods have seen established for assessing memory reactivation based on bursts of ensemble neural spike activity during offline states. Using population-decoding methods, we propose a new statistical metric, the weighted distance correlation, to assess hippocampal memory reactivation (i.e., spatial memory replay) during quiet wakefulness and slow-wave sleep. The new metric can be combined with an unsupervised population decoding analysis, which is invariant to latent state labeling and allows us to detect statistical dependency beyond linearity in memory traces. We validate the new metric using two rat hippocampal recordings in spatial navigation tasks. Our proposed analysis framework may have a broader impact on assessing memory reactivations in other brain regions under different behavioral tasks.


2018 ◽  
Vol 115 (14) ◽  
pp. E3276-E3285 ◽  
Author(s):  
N. Apurva Ratan Murty ◽  
S. P. Arun

Object recognition is challenging because the same object can produce vastly different images, mixing signals related to its identity with signals due to its image attributes, such as size, position, rotation, etc. Previous studies have shown that both signals are present in high-level visual areas, but precisely how they are combined has remained unclear. One possibility is that neurons might encode identity and attribute signals multiplicatively so that each can be efficiently decoded without interference from the other. Here, we show that, in high-level visual cortex, responses of single neurons can be explained better as a product rather than a sum of tuning for object identity and tuning for image attributes. This subtle effect in single neurons produced substantially better population decoding of object identity and image attributes in the neural population as a whole. This property was absent both in low-level vision models and in deep neural networks. It was also unique to invariances: when tested with two-part objects, neural responses were explained better as a sum than as a product of part tuning. Taken together, our results indicate that signals requiring separate decoding, such as object identity and image attributes, are combined multiplicatively in IT neurons, whereas signals that require integration (such as parts in an object) are combined additively.


2017 ◽  
Vol 37 (46) ◽  
pp. 11204-11219 ◽  
Author(s):  
Ryo Sasaki ◽  
Dora E. Angelaki ◽  
Gregory C. DeAngelis

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