cluster size distribution
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2021 ◽  
Vol 17 (11) ◽  
pp. e1009011
Author(s):  
Mrinmoy Mukherjee ◽  
Herbert Levine

The first stage of the metastatic cascade often involves motile cells emerging from a primary tumor either as single cells or as clusters. These cells enter the circulation, transit to other parts of the body and finally are responsible for growth of secondary tumors in distant organs. The mode of dissemination is believed to depend on the EMT nature (epithelial, hybrid or mesenchymal) of the cells. Here, we calculate the cluster size distribution of these migrating cells, using a mechanistic computational model, in presence of different degree of EMT-ness of the cells; EMT is treated as given rise to changes in their active motile forces (μ) and cell-medium surface tension (Γ). We find that, for (μ > μmin, Γ > 1), when the cells are hybrid in nature, the mean cluster size, N ¯ ∼ Γ 2 . 0 / μ 2 . 8, where μmin increases with increase in Γ. For Γ ≤ 0, N ¯ = 1, the cells behave as completely mesenchymal. In presence of spectrum of hybrid states with different degree of EMT-ness (motility) in primary tumor, the cells which are relatively more mesenchymal (higher μ) in nature, form larger clusters, whereas the smaller clusters are relatively more epithelial (lower μ). Moreover, the heterogeneity in μ is comparatively higher for smaller clusters with respect to that for larger clusters. We also observe that more extended cell shapes promote the formation of smaller clusters. Overall, this study establishes a framework which connects the nature and size of migrating clusters disseminating from a primary tumor with the phenotypic composition of the tumor, and can lead to the better understanding of metastasis.


2021 ◽  
Author(s):  
Mrinmoy Mukherjee ◽  
Herbert Levine

AbstractThe first stage of the metastatic cascade often involves motile cells emerging from a primary tumor either as single cells or as clusters. These cells enter the circulation, transit to other parts of the body and finally are responsible for growth of secondary tumors in distant organs. The mode of dissemination is believed to depend on the EMT nature (epithelial, hybrid or mesenchymal) of the cells. Here, we calculate the cluster size distribution of these migrating cells, using a mechanistic computational model, in presence of different degree of EMT-ness of the cells; EMT is treated as given rise to changes in their active motile forces (μ) and cell-medium surface tension (Γ). We find that, for (μ > μmin, Γ > 1), when the cells are hybrid in nature, the mean cluster size, , where μmin increases with increase in Γ. For Γ ≤ 0, , the cells behave as completely mesenchymal. In presence of spectrum of hybrid states with different degree of EMT-ness (motility) in primary tumor, the cells which are relatively more mesenchymal (higher μ) in nature, form larger clusters, whereas the smaller clusters are relatively more epithelial (lower μ). Moreover, the heterogeneity in μ is comparatively higher for smaller clusters with respect to that for larger clusters. We also observe that more extended cell shapes promote the formation of smaller clusters. Overall, this study establishes a framework which connects the nature and size of migrating clusters disseminating from a primary tumor with the phenotypic composition of the tumor, and can lead to the better understanding of metastasis.Author summaryIn the process of metastasis, tumor cells disseminate from the primary tumor either as single cells or multicellular clusters. These clusters are potential contributor to the initiation of secondary tumor in distant organs. Our computational model captures the size distribution of migrating clusters depending on the adhesion and motility of the cells (which determine the degree of their EMT nature). Furthermore, we investigate the effect of heterogeneity of cell types in the primary tumor on the resultant heterogeneity of cell types in clusters of different sizes. We believe that the understanding the formation and nature of these clusters, dangerous actors in the deadly aspect of cancer progression, will be useful for improving prognostic methods and eventually better treatments.


Soft Matter ◽  
2021 ◽  
Author(s):  
Pablo de Castro ◽  
Saulo Diles ◽  
Rodrigo Soto ◽  
Peter Sollich

The persistent motion of bacteria produces clusters with a stationary cluster size distribution (CSD). Here we develop a minimal model for bacteria in a narrow channel to assess the relative...


Soft Matter ◽  
2021 ◽  
Author(s):  
Pablo de Castro ◽  
Francisco M. Rocha ◽  
Saulo Diles ◽  
Rodrigo Soto ◽  
Peter Sollich

Self-propelled swimmers such as bacteria agglomerate into clusters as a result of their persistent motion. In 1D, those clusters do not coalesce macroscopically and the stationary cluster size distribution (CSD)...


Entropy ◽  
2020 ◽  
Vol 22 (5) ◽  
pp. 558 ◽  
Author(s):  
Alexander S. Abyzov ◽  
Jürn W. P. Schmelzer ◽  
Vladimir M. Fokin ◽  
Edgar D. Zanotto

Crystal nucleation can be described by a set of kinetic equations that appropriately account for both the thermodynamic and kinetic factors governing this process. The mathematical analysis of this set of equations allows one to formulate analytical expressions for the basic characteristics of nucleation, i.e., the steady-state nucleation rate and the steady-state cluster-size distribution. These two quantities depend on the work of formation, Δ G ( n ) = − n Δ μ + γ n 2 / 3 , of crystal clusters of size n and, in particular, on the work of critical cluster formation, Δ G ( n c ) . The first term in the expression for Δ G ( n ) describes changes in the bulk contributions (expressed by the chemical potential difference, Δ μ ) to the Gibbs free energy caused by cluster formation, whereas the second one reflects surface contributions (expressed by the surface tension, σ : γ = Ω d 0 2 σ , Ω = 4 π ( 3 / 4 π ) 2 / 3 , where d 0 is a parameter describing the size of the particles in the liquid undergoing crystallization), n is the number of particles (atoms or molecules) in a crystallite, and n = n c defines the size of the critical crystallite, corresponding to the maximum (in general, a saddle point) of the Gibbs free energy, G. The work of cluster formation is commonly identified with the difference between the Gibbs free energy of a system containing a cluster with n particles and the homogeneous initial state. For the formation of a “cluster” of size n = 1 , no work is required. However, the commonly used relation for Δ G ( n ) given above leads to a finite value for n = 1 . By this reason, for a correct determination of the work of cluster formation, a self-consistency correction should be introduced employing instead of Δ G ( n ) an expression of the form Δ G ˜ ( n ) = Δ G ( n ) − Δ G ( 1 ) . Such self-consistency correction is usually omitted assuming that the inequality Δ G ( n ) ≫ Δ G ( 1 ) holds. In the present paper, we show that: (i) This inequality is frequently not fulfilled in crystal nucleation processes. (ii) The form and the results of the numerical solution of the set of kinetic equations are not affected by self-consistency corrections. However, (iii) the predictions of the analytical relations for the steady-state nucleation rate and the steady-state cluster-size distribution differ considerably in dependence of whether such correction is introduced or not. In particular, neglecting the self-consistency correction overestimates the work of critical cluster formation and leads, consequently, to far too low theoretical values for the steady-state nucleation rates. For the system studied here as a typical example (lithium disilicate, Li 2 O · 2 SiO 2 ), the resulting deviations from the correct values may reach 20 orders of magnitude. Consequently, neglecting self-consistency corrections may result in severe errors in the interpretation of experimental data if, as it is usually done, the analytical relations for the steady-state nucleation rate or the steady-state cluster-size distribution are employed for their determination.


2020 ◽  
Vol 102 (2) ◽  
pp. 670-694
Author(s):  
Miguel Abadi ◽  
Ana Cristina Moreira Freitas ◽  
Jorge Milhazes Freitas

Soft Matter ◽  
2020 ◽  
Vol 16 (30) ◽  
pp. 7077-7087 ◽  
Author(s):  
Pritha Dolai ◽  
Arghya Das ◽  
Anupam Kundu ◽  
Chandan Dasgupta ◽  
Abhishek Dhar ◽  
...  

The single-file dynamics of various models of interacting scalar active particles shows universality. The cluster size distribution and tagged-particle MSD scale with density and activity parameters with the same scaling functions across all models.


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