Genome Sequence of a Thermoacidophilic Methanotroph Belonging to the Verrucomicrobiota Phylum from Geothermal Hot Springs in Yellowstone National Park: A Metagenomic Assembly and Reconstruction

Verrucomicrobiotal methanotrophs are thermoacidophilic methane oxidizers that have been isolated from volcanic and geothermal regions of the world. We used a metagenomic approach that entailed obtaining the whole genome sequence of a verrucomicrobiotal methanotroph from a microbial consortium enriched from samples obtained from Nymph Lake (89.9 °C, pH 2.73) in Yellowstone National Park in the USA. To identify and reconstruct the verrucomicrobiotal genome from Illumina NovaSeq 6000 sequencing data, we constructed a bioinformatic pipeline with various combinations of de novo assembly, alignment, and binning algorithms. Based on the marker gene (pmoA), we identified and assembled the Candidatus Methylacidiphilum sp. YNP IV genome (2.47 Mbp, 2392 ORF, and 41.26% GC content). In a comparison of average nucleotide identity between Ca. Methylacidiphilum sp. YNP IV and Ca. Methylacidiphilum fumariolicum SolV, its closest 16S rRNA gene sequence relative, is lower than 95%, suggesting that Ca. Methylacidiphilum sp. YNP IV can be regarded as a different species. The Ca. Methylacidiphilum sp. YNP IV genome assembly showed most of the key genes for methane metabolism, the CBB pathway for CO2 fixation, nitrogen fixation and assimilation, hydrogenases, and rare earth elements transporter, as well as defense mechanisms. The assembly and reconstruction of a thermoacidophilic methanotroph belonging to the Verrucomicrobiota phylum from a geothermal environment adds further evidence and knowledge concerning the diversity of biological methane oxidation and on the adaptation of this geochemically relevant reaction in extreme environments.

Elioraea tepida, sp. nov., a Moderately Thermophilic Aerobic Anoxygenic Phototrophic Bacterium Isolated from the Mat Community of an Alkaline Siliceous Hot Spring in Yellowstone National Park, WY, USA

Strain MS-P2T was isolated from microbial mats associated with Mushroom Spring, an alkaline siliceous hot spring in Yellowstone National Park, WY, USA. The isolate grows chemoheterotrophically by oxygen-dependent respiration, and light stimulates photoheterotrophic growth under strictly oxic conditions. Strain MS-P2T synthesizes bacteriochlorophyll a and the carotenoid spirilloxanthin. However, photoautotrophic growth did not occur under oxic or anoxic conditions, suggesting that this strain should be classified as an aerobic anoxygenic phototrophic bacterium. Strain MS-P2T cells are motile, curved rods about 0.5 to 1.0 μm wide and 1.0 to 1.5 μm long. The optimum growth temperature is 45–50 °C, and the optimum pH for growth is circum-neutral (pH 7.0–7.5). Sequence analysis of the 16S rRNA gene revealed that strain MS-P2T is closely related to Elioraea species, members of the class Alphaproteobacteria, with a sequence identity of 96.58 to 98%. The genome of strain MS-P2T is a single circular DNA molecule of 3,367,643 bp with a mol% guanine-plus-cytosine content of 70.6%. Based on phylogenetic, physiological, biochemical, and genomic characteristics, we propose this bacteriochlorophyll a-containing isolate is a new species belonging to the genus Elioraea, with the suggested name Elioraeatepida. The type-strain is strain MS-P2T (= JCM33060T = ATCC TSD-174T).

Resisting “the World of the Powerful”: “Wild” Steam and the Creation of Yellowstone National Park

In this essay, I argue that steam operates as a critical, other-than-human actor in the establishment of Yellowstone National Park and a broader, colonial posture towards the natural world that reflects a sharp division between nature and culture on the settler landscape—reiterating what Marisol de la Cadena and Mario Blaser call “the world of the powerful,” and a “world where only one world fits” (2018, pp 2-3). By appearing in contradictory contexts of powerful engines and pristine nature, steam was bifurcated into natural and cultural registers in order to justify the establishment of the natural park and the colonists’ claim to Yellowstone as “property,” foreclosing alternative relationships to the land such as those of the region’s Indigenous residents. Approaching this research from the perspective of a settler on Indigenous lands, I am invested in engaging new materialist and ecological methodologies in the important work of decolonial critique. Adopting Nathan Stormer’s (2016) “new materialist genealogy” and Nathaniel Rivers’ (2015) treatment of wildness in service of a decolonial agenda, I demonstrate how steam’s inherent repulsion to nature/culture dichotomies contests the very idea of the park itself, Yellowstone’s importance to the settler state’s expansion into the west, and its popular understanding as an exemplar of environmental politics. Further, this essay provides a methodological and theoretical intervention for new materialist and ecological scholarship to support decolonial projects in solidarity with Indigenous resistance. By unraveling dominant discourses that persist in collective identification with Yellowstone, the borders of the park that denote iconicity and exemplarity, unspoiled nature from capitalist development, become brittle, fragile, and so, too, does their dominance in discourses about environmentalism. By disrupting Yellowstone and undermining its dominance, we can demonstrate, unequivocally, that another world—indeed worlds—are possible.

Holocene geo-ecological evolution of Lower Geyser Basin, Yellowstone National Park (USA)

Changes in climate and fire regime have long been recognized as drivers of the postglacial vegetation history of Yellowstone National Park, but the effects of locally dramatic hydrothermal activity are poorly known. Multi-proxy records from Goose Lake have been used to describe the history of Lower Geyser Basin where modern hydrothermal activity is widespread. From 10,300 cal yr BP to 3800 cal yr BP, thermal waters discharged into the lake, as evidenced by the deposition of arsenic-rich sediment, fluorite mud, and relatively high δ13Csediment values. Partially thermal conditions affected the limnobiotic composition, but prevailing climate, fire regime, and rhyolitic substrate maintained Pinus contorta forest in the basin, as found throughout the region. At 3800 cal yr BP, thermal water discharge into Goose Lake ceased, as evidenced by a shift in sediment geochemistry and limnobiota. Pollen and charcoal data indicate concurrent grassland development with limited fuel biomass and less fire activity, despite late Holocene climate conditions that were conducive to expanded forest cover. The shift in hydrothermal activity at Goose Lake and establishment of the treeless geyser basin may have been the result of a tectonic event or change in hydroclimate. This record illustrates the complex interactions of geology and climate that govern the development of an active hydrothermal geo-ecosystem.

Breeding displacement in gray wolves (Canis lupus): Three males usurp breeding position and pup rearing from a neighboring pack in Yellowstone National Park

Gray Wolves (Canis lupus) are territorial, group living carnivores that live in packs typically consisting of a dominant breeding pair and their offspring. Breeding tenures are relatively short and competitive, with vacancies usually occurring following a breeder’s death, and are often filled by unrelated immigrants or by relatives of the previous breeder. The frequency and conditions of active breeder displacements are poorly understood. Position changes in the dominance hierarchy are common yet rarely documented in detail. We describe a turnover in male breeding position in a wolf pack by males from a neighboring pack in mid-summer 2016 in Yellowstone National Park. Over the course of two months, three males from the Mollie’s pack displaced the breeding male of the neighboring Wapiti Lake pack, joined the pack’s two adult females, and subsequently raised the previous male’s four approximately three-month old pups. In the four years following the displacement (2017 to 2020), at least one of the intruding males has successfully bred with the dominant female and most years with a subordinate female (who was one of the pups at the time of displacement). The pack reared pups to adulthood each year. Male breeding displacements are likely influenced by male-male competition and female mate choice. These changes are the result of individuals competing to improve breeding position and may lead to increased pack stability and greater reproductive success. We report in detail on the behavior of a closely observed breeding displacement and we discuss the adaptive benefits of the change.