Taxonomic revision of the pampas cat Leopardus colocola complex (Carnivora: Felidae): an integrative approach

The pampas cat Leopardus colocola has been subject to conflicting classifications over the years. Currently, one polytypic species with seven subspecies is recognized, but integrative taxonomic study for this debated group has never been done. Here, we combine the broadest morphological coverage of the pampas cat to date with molecular data and ecological niche models to clarify its species composition and test the validity of recently proposed subspecies. The multiple lines of evidence derived from morphology, molecular, biogeography and climatic niche datasets converged on the recognition of five monotypic species: L. braccatus, L. colocola, L. garleppi (including thomasi, budini, steinbachi, crespoi and wolffsohni as synonyms), L. munoai and L. pajeros (including crucina as synonym). These five species are morphologically diagnosable based on skin and skull traits, have evolved in distinct climatic niche spaces and were recovered in molecular species delimitation. Contrary to previous taxonomic arrangements, we do not recognize subspecies in pampas cats. To objectively define the two most controversial species, we designate neotypes for L. colocola and L. pajeros. The diversification of pampas cats is associated with Middle Pleistocene glaciations, but additional genetic samples from the central Andean region are still needed to conclusively reconstruct its evolutionary history.

Molecular biogeography of planktonic and benthic diatoms in the Yangtze River

Background Diatoms are of great significance to primary productivity in oceans, yet little is known about their biogeographic distribution in oligotrophic rivers. Results With the help of metabarcoding analysis of 279 samples from the Yangtze River, we provided the first integral biogeographic pattern of planktonic and benthic diatoms over a 6030 km continuum along the world’s third largest river. Our study revealed spatial dissimilarity of diatoms under varying landforms, including plateau, mountain, foothill, basin, foothill-mountain, and plain regions, from the river source to the estuary. Environmental drivers of diatom communities were interpreted in terms of photosynthetically active radiation, temperature, channel slope and nutrients, and human interference. Typical benthic diatoms, such as Pinnularia, Paralia, and Aulacoseira, experienced considerable reduction in relative abundance downstream of the Three Gorges Dam and the Xiluodu Dam, two of the world’s largest dams. Conclusions Our study revealed that benthic diatoms are of particular significance in characterizing motile guild in riverine environments, which provides insights into diatom biogeography and biogeochemical cycles in large river ecosystems.

Rescuing the ectomycorrhizal biodiversity associated with South American Nothofagaceae forest, from the 19th century naturalists up to molecular biogeography

The southernmost portion of the Andes in South America hosts Nothofagaceae forests that form ectomycorrhizal (EcM) associations. We compiled all the published reports of EcM taxa from these woodlands, based on fruit-body collections and molecularly identified root tips. This resulted in 87 peer-reviewed research papers dealing with EcM associations from Nothofagaceae forests published over the past 62 years. Based on these papers the EcM richness and its association with Nothofagaceae species was analyzed. Represented by 45 genera (34 Basidiomycetes and 11 Ascomycetes), 479 EcM taxa have been recorded, plus an additional 46 EcM taxa which are potentially EcM. Cortinarius was the most frequent and diverse genus, with 64.9% of total species. Nothofagus dombeyi had the highest number of unique EcM species, followed by N. pumilio, N. antarctica and Lophozonia obliqua. The EcM community associated with Nothofagus species, except N. nitida, showed higher similarities among themselves, than with Lophozonia and Fuscospora species. Beta diversity indexes showed EcM Nothofagus species have 29–42% niche overlap, while Nothofagus—Lophozonia only had 1–16%. The assessment of the accuracy of the EcM diversity, host specificity and community structure deserve further studies combining phylogenetic analysis based on broad ecological surveys. On the basis of pre-selected criteria Austropaxillus statuum, Cortinarius fragilis, Cortinarius xiphidipus and Hallingea purpurea are proposed as candidates for nursery spore inoculations, and should be subject to scientific evaluation to determine costs and benefits.

The London Workshop on the Biogeography and Connectivity of the Clarion-Clipperton Zone

Recent years have seen a rapid increase in survey and sampling expeditions to the Clarion-Clipperton Zone (CCZ) abyssal plain, a vast area of the central Pacific that is currently being actively explored for deep-sea minerals (ISA, 2016). Critical to the development of evidence-based environmental policy in the CCZ are data on the biogeography and connectivity of species at a CCZ-regional level. The London Workshop on the Biogeography and Connectivity of the CCZ was convened to support the integration and synthesis of data from European Union (EU) CCZ projects, supported by the EU Managing Impacts of Deep-Sea Resource Exploitation (MIDAS) and EU Joint Programming Initiative Healthy and Productive Seas and Oceans (JPI Oceans) projects. The London Workshop had three clear goals: (1) To explore, review and synthesise the latest molecular biogeography and connectivity data from across recent CCZ cruises from both contractor and academia-funded projects; (2) To develop complementary and collaborative institutional and program-based academic publication plans to avoid duplication of effort and ensure maximum collaborative impact; (3) To plan a joint synthetic data publication highlighting key results from a range of planned molecular biogeography/connectivity publications. 32 participants attended the workshop at the Natural History Museum in London from 10-12 May 2016. Presentations and discussions are summarised in this report covering (1) overviews of current CCZ environmental projects, (2) policy and industry perspectives, (3) synthesis of DNA taxonomy and biogeography studies, (4) summaries of the latest population genetic studies, (5) summaries of the latest broader morphological context, (6) an overview of publication and proposal plans to maximise collaborative opportunities and finally a series of workshop recommendations.