Taxonomic papers as published products of the biodiversity inventory: if not the Impact Factor (IF) or Quartiles (Q), then what determines their importance estimated on the basis of the Research Interest Score?

This study is uniquely based on the Research Interest Score (RGRI) and not on other existing bibliometric criteria for evaluation of published biological inventory products (articles and monographs). RGRI is a ResearchGate.net score that measures scientists’ interest in the publication and is based on its citations, recommendations, and reads. Our data revealed that high RGRI scores of publications were generally not determined by the journal’s Impact Factor (IF) or high quartiles (Q). However, open access to publications undoubtedly creates the strongest preconditions for the rise of RGRI. The importance and popularity of a publications can also be affected by its various other characteristics, for example, international collaboration of authors, ecological issues such as plant-insect interactions, and even the wording of the publication title.

A Biological Inventory of Prophages in A. baumannii Genomes Reveal Distinct Distributions in Classes, Length, and Genomic Positions

Acinetobacter baumannii is of major clinical importance as the bacterial pathogen often causes hospital acquired infections, further complicated by the high prevalence of antibiotic resistant strains. Aside from natural tolerance to certain antibiotic classes, resistance is often acquired by the exchange of genetic information via conjugation but also by the high natural competence exhibited by A. baumannii. In addition, bacteriophages are able to introduce resistance genes but also toxins and virulence factors via phage mediated transduction. In this work, we analyzed the complete genomes of 177 A. baumannii strains for the occurrence of prophages, and analyzed their taxonomy, size and positions of insertion. Among all the prophages that were detected, Siphoviridae and Myoviridae were the two most commonly found families, while the average genome size was determined to be approximately 4 Mbp. Our data shows the wide variation in the number of prophages in A. baumannii genomes and the prevalence of certain prophages within strains that are most “successful” or potentially beneficial to the host. Our study also revealed that only two specific sites of insertion within the genome of the host bacterium are being used, with few exceptions only. Lastly, we analyzed the existence of genes that are encoded in the prophages, which may confer antimicrobial resistance (AMR). Several phages carry AMR genes, including OXA-23 and NDM-1, illustrating the importance of lysogenic phages in the acquisition of resistance genes.

A Biological Inventory of Prophages in A. baumannii Genomes Reveal Distinct Distributions in Classes, Length and Genomic Positions

Acinetobacter baumannii is of major clinical importance as the bacterial pathogen often causes hospital acquired infections, further complicated by the high prevalence of antibiotic resistant strains. Aside from natural tolerance to certain antibiotic classes, resistance is often acquired by the exchange of genetic information via conjugation but also by the high natural competence exhibited by A. baumannii. In addition, bacteriophages are able to introduce resistance genes but also toxins and virulence factors via phage mediated transduction. In this work, we analysed the complete genomes of 177 A. baumannii strains for the occurrence of prophages, and analysed their taxonomy, size and positions of insertion. Among all the prophages that were detected, Siphoviridae and Myoviridae were the two most commonly found families, while the average genome size was determined as 3.98 Mbp. Our data shows the wide variation in the number of prophages in A. baumannii genomes and the prevalence of certain prophages within strains that are most “successful” or potentially beneficial to the host. Our study also revealed that only two specific sites of insertion within the genome of the host bacterium are being used, with few exceptions only. Lastly, we analysed the existence of genes that are encoded in the prophages, which confer antimicrobial resistance (AMR). Several phages carry AMR genes, including OXA-23 and NDM-1, illustrating the importance of lysogenic phages in the acquisition of resistance genes.

Los Roques and Las Aves Archipelagos, Venezuela: A Marine Ecological and Conservation Reconnaissance of Two Little-Known Southeastern Caribbean Oceanic Archipelagos

The Los Roques and Las Aves oceanic coral reef archipelagos of Venezuela lie in a biogeographically unique and biologically diverse area of the Caribbean and possess extensive coral reefs, seagrass beds, mangroves and shallow macroalgae meadows. The geographic location of these archipelagos safeguards them from most Western Atlantic hurricane damage as well as the most severe Caribbean coral bleaching episodes. While the Aves islands remain uninhabited and are an area of low accessibility, Los Roques has been a managed national park since 1972. We here present an updated synthesis of recent research for these archipelagos as an aid to scientists and conservationists interested in these island groups for which no recent ecological reviews are available. Los Roques has been much better documented than Las Aves and is the largest coral reef marine protected area of Venezuela. It has about 1,500 inhabitants living principally from tourism and fisheries. Studies show that Los Roques possesses fish populations that suffer comparatively less fishing pressure and may serve as a rare benchmark for pristine fish communities elsewhere in the Caribbean. It has also successfully maintained its importance to seabird colonies for the last five decades, notwithstanding serious marine park funding and staffing shortages. A new baseline biological inventory for Las Aves is particulary critical considering the fragmentary information available for this archipelago. The relatively intact and resilient oceanic coral reef systems of Los Roques and Las Aves are of regionally significant conservation value and deserve much more conservation and biodiversity attention than so far accorded.