Mobility-shift DNA-binding assay (band shift, band shift assay, DNA-binding assay, gel electrophoresis DNA-binding assay, gel mobility shift assay, gel retardation assay)

1995 ◽  
Vol 42 (2) ◽  
pp. 171-176
Author(s):  
R Rzepecki ◽  
E Markiewicz ◽  
J Szopa

The nuclear matrices from White bush (Cucurbita pepo var. patisonina) cell nuclei have been isolated using three methods: I, standard procedure involving extraction of cell nuclei with 2 M NaCl and 1% Triton X-100; II, the same with pre-treatment of cell nuclei with 0.5 mM CuSO4 (stabilisation step); and III, method with extraction by lithium diiodosalicylate (LIS), and compared the polypeptide pattern. The isolated matrices specifically bind SAR DNA derived from human beta-interferon gene in the exogenous SAR binding assay and in the gel mobility shift assay. Using IgG against the 32 kDa endonuclease we have found in the DNA-protein blot assay that this protein is one of the proteins binding SAR DNA. We have identified three proteins with molecular mass of 65 kDa, 60 kDa and 32 kDa which are responsible for SAR DNA binding in the gel mobility shift assay experiments.


2003 ◽  
pp. 95-106 ◽  
Author(s):  
Suzanne M. Cutts ◽  
Andrew Masta ◽  
Con Panousis ◽  
Peter G. Parsons ◽  
Richard A. Sturm ◽  
...  

1992 ◽  
Vol 12 (1) ◽  
pp. 413-421 ◽  
Author(s):  
P Cortes ◽  
O Flores ◽  
D Reinberg

The previously described transcription factor IIA (TFIIA) protein fraction was separated into two factors that affect transcription, TFIIA and TFIIJ. TFIIA was found to have a stimulatory effect, and TFIIJ was found to be required for transcription. The requirement of TFIIJ was observed when bacterially produced purified human or yeast (Saccharomyces cerevisiae) TATA-binding protein (TBP) was used in lieu of the endogenous HeLa cell TFIID complex, suggesting that TFIIJ may be part of the TFIID complex. The stimulatory activity of TFIIA was found also to be dependent on the source of the TBP. Transcription reactions reconstituted with TFIID were stimulated by TFIIA; however, when human or yeast TBP was used instead of TFIID, TFIIA had no effect. TFIIA was found to interact with the TBP and was extensively purified by the use of affinity chromatography on columns containing immobilized recombinant yeast TBP. TFIIA is a heterotrimer composed of polypeptides of 34, 19, and 14 kDa. These three polypeptides were required to isolate, by using the gel mobility shift assay, a stable complex between TBP and the TATA box sequence.


1990 ◽  
Vol 81 (12) ◽  
pp. 1210-1213 ◽  
Author(s):  
Yasuhiro Fujiwara ◽  
Kazuo Kasahara ◽  
Yoshikazu Sugimoto ◽  
Kazuto Nishio ◽  
Tohru Ohmori ◽  
...  

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