Comparative genome‐wide analysis of codon usage of different bacterial species infecting Oryza sativa

2018 ◽  
Vol 119 (11) ◽  
pp. 9346-9356 ◽  
Author(s):  
S Vasanthi ◽  
J Febin Prabhu Dass
Keyword(s):  
Oryza Sativa ◽  
Codon Usage ◽  
Bacterial Species ◽  
Comparative Genome ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Comparative genome-wide analysis of repetitive DNA in the genus Populus L.

2017 ◽  
Vol 13 (5) ◽  
Author(s):  
Gabriele Usai ◽  
Flavia Mascagni ◽  
Lucia Natali ◽  
Tommaso Giordani ◽  
Andrea Cavallini
Keyword(s):  
Repetitive Dna ◽  
Comparative Genome ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Energetic Evolution of Cellular Transportomes

2017 ◽  
Author(s):  
Behrooz Darbani ◽  
Douglas B. Kell ◽  
Irina Borodina
Keyword(s):  
Ion Channels ◽  
Bacterial Species ◽  
Living Cells ◽  
Energetic Efficiency ◽  
Cellular Functions ◽  
Transporter Proteins ◽  
Genome Wide Analysis ◽  
Solute Carriers ◽  
Genome Wide ◽  
A Genome

ABSTRACTTransporter proteins mediate the translocation of substances across the membranes of living cells. We performed a genome-wide analysis of the compositional reshaping of cellular transporters (the transportome) across the kingdoms of bacteria, archaea, and eukarya. We show that the transportomes of eukaryotes evolved strongly towards a higher energetic efficiency, as ATP-dependent transporters diminished and secondary transporters and ion channels proliferated. This change has likely been important in the development of tissues performing energetically costly cellular functions. The transportome analysis also indicated seven bacterial species, includingNeorickettsia risticiiandNeorickettsia sennetsu, as likely origins of the mitochondrion in eukaryotes, due to the restricted presence therein of clear homologues of modern mitochondrial solute carriers.

scholarly journals Genome-wide analysis and environmental response profiling of phosphate-induced-1 family genes in rice (Oryza sativa)

2019 ◽  
Vol 33 (1) ◽  
pp. 627-638 ◽  
Author(s):  
Changqian Quan ◽  
Zhigang Bai ◽  
Shiwei Zheng ◽  
Jingming Zhou ◽  
Qiang Yu ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Environmental Response ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-wide analysis of RopGEF gene family to identify genes contributing to pollen tube growth in rice (Oryza sativa)

2020 ◽  
Vol 20 (1) ◽  
Author(s):  
Eui-Jung Kim ◽  
Sung-Wook Park ◽  
Woo-Jong Hong ◽  
Jeniffer Silva ◽  
Wanqi Liang ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Pollen Tube ◽  
Gene Family ◽  
Pollen Tube Growth ◽  
Tube Growth ◽  
Genome Wide Analysis ◽  
Genome Wide

Genome-wide analysis and environmental response profiling of SOT family genes in rice (Oryza sativa)

2012 ◽  
Vol 34 (5) ◽  
pp. 549-560 ◽  
Author(s):  
Rongjun Chen ◽  
Yunyun Jiang ◽  
Jiali Dong ◽  
Xin Zhang ◽  
Hongbo Xiao ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Environmental Response ◽  
Genome Wide Analysis ◽  
Genome Wide

Genome-wide analysis of codon usage bias in Ebolavirus

2015 ◽  
Vol 196 ◽  
pp. 87-93 ◽  
Author(s):  
Juan Cristina ◽  
Pilar Moreno ◽  
Gonzalo Moratorio ◽  
Héctor Musto
Keyword(s):  
Codon Usage ◽  
Codon Usage Bias ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-wide analysis of codon usage bias in Bovine Coronavirus

2017 ◽  
Vol 14 (1) ◽  
Author(s):  
Matías Castells ◽  
Matías Victoria ◽  
Rodney Colina ◽  
Héctor Musto ◽  
Juan Cristina
Keyword(s):  
Codon Usage ◽  
Codon Usage Bias ◽  
Bovine Coronavirus ◽  
Genome Wide Analysis ◽  
Genome Wide
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