Tissue-specific DNA methylation patterns of the rat glial fibrillary acidic protein gene

1994 ◽  
Vol 39 (6) ◽  
pp. 694-707 ◽  
Author(s):  
D. F. Condorelli ◽  
V. G. Nicoletti ◽  
V. Barresi ◽  
A. Caruso ◽  
S. Conticello ◽  
...  
1994 ◽  
Vol 39 (6) ◽  
pp. 680-693 ◽  
Author(s):  
B. Teter ◽  
H. H. Osterburg ◽  
C. P. Anderson ◽  
C. E. Finch

1986 ◽  
Vol 6 (5) ◽  
pp. 1529-1534 ◽  
Author(s):  
S A Lewis ◽  
N J Cowan

The origin of introns and their role (if any) in gene expression, in the evolution of the genome, and in the generation of new expressed sequences are issues that are understood poorly, if at all. Multigene families provide a favorable opportunity for examining the evolutionary history of introns because it is possible to identify changes in intron placement and content since the divergence of family members from a common ancestral sequence. Here we report the complete sequence of the gene encoding the 68-kilodalton (kDa) neurofilament protein; the gene is a member of the intermediate filament multigene family that diverged over 600 million years ago. Five other members of this family (desmin, vimentin, glial fibrillary acidic protein, and type I and type II keratins) are encoded by genes with six or more introns at homologous positions. To our surprise, the number and placement of introns in the 68-kDa neurofilament protein gene were completely anomalous, with only three introns, none of which corresponded in position to introns in any characterized intermediate filament gene. This finding was all the more unexpected because comparative amino acid sequence data suggest a closer relationship of the 68-kDa neurofilament protein to desmin, vimentin, and glial fibrillary acidic protein than between any of these three proteins and the keratins. It appears likely that an mRNA-mediated transposition event was involved in the evolution of the 68-kDa neurofilament protein gene and that subsequent events led to the acquisition of at least two of the three introns present in the contemporary sequence.


Author(s):  
Moumouni Konate ◽  
Michael J. Wilkinson ◽  
Banjamin Mayne ◽  
Eileen Scott ◽  
Bettina Berger ◽  
...  

The barley (Hordeum vulgare) genome comprises over 32,000 genes, with differentiated cells expressing only a subset of genes; the remainder being silent. Mechanisms by which tissue-specific genes are regulated are not entirely understood, although DNA methylation is likely to be involved. DNA methylation patterns are not static during plant development, but it is still unclear whether different organs possess distinct methylation profiles. Methylation-sensitive GBS was used to generate DNA methylation profiles for roots, leaf-blades and leaf-sheaths from five barley varieties, using seedlings at the three-leaf stage. Differentially Methylated Markers (DMMs) were characterised by pairwise comparisons of roots, leaf-blades and leaf-sheaths of three different ages. While very many DMMs were found between roots and leaf parts, only a few existed between leaf-blades and leaf-sheaths, with differences decreasing with leaf rank. Organ-specific DMMs appeared to target mainly repeat regions, implying that organ differentiation partially relies on the spreading of DNA methylation from repeats to promoters of adjacent genes. Furthermore, the biological functions of differentially methylated genes in the different organs correlated with functional specialisation. Our results indicate that different organs do possess diagnostic methylation profiles and suggest that DNA methylation is important for both tissue development and differentiation and organ function.


1997 ◽  
Vol 19 (5) ◽  
pp. 446-456 ◽  
Author(s):  
D.F. Condorelli ◽  
P. Dell'Albani ◽  
S.G. Conticello ◽  
V. Barresi ◽  
V.G. Nicoletti ◽  
...  

2016 ◽  
Vol 27 (2) ◽  
pp. 126-132 ◽  
Author(s):  
Kiyoung Eun ◽  
Seon-Ung Hwang ◽  
Hye-Min Jeon ◽  
Sang-Hwan Hyun ◽  
Hyunggee Kim

1996 ◽  
Vol 5 (2) ◽  
pp. 69-75 ◽  
Author(s):  
T. Sadatomo ◽  
J. Yoshida ◽  
T. Wakabayashi ◽  
M. Mizuno ◽  
K. Harada ◽  
...  

2012 ◽  
Vol 33 (12) ◽  
pp. 1736-1745 ◽  
Author(s):  
Tania Madi ◽  
Kuppareddi Balamurugan ◽  
Robin Bombardi ◽  
George Duncan ◽  
Bruce McCord

2010 ◽  
Vol 13 (1) ◽  
pp. 42-50 ◽  
Author(s):  
A. Restrepo ◽  
C. A. Smith ◽  
S. Agnihotri ◽  
M. Shekarforoush ◽  
P. N. Kongkham ◽  
...  

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