Computational Prediction of Chemical Tools for Identification and Validation of Synthetic Lethal Interaction Networks

2021 ◽  
pp. 333-358
Author(s):  
Kalpana K. Bhanumathy ◽  
Omar Abuhussein ◽  
Frederick S. Vizeacoumar ◽  
Andrew Freywald ◽  
Franco J. Vizeacoumar ◽  
...  
Cell Reports ◽  
2019 ◽  
Vol 29 (1) ◽  
pp. 118-134.e8 ◽  
Author(s):  
Rita Sulahian ◽  
Jason J. Kwon ◽  
Katherine H. Walsh ◽  
Emma Pailler ◽  
Timothy L. Bosse ◽  
...  

2008 ◽  
Vol 105 (43) ◽  
pp. 16653-16658 ◽  
Author(s):  
S. J. Dixon ◽  
Y. Fedyshyn ◽  
J. L. Y. Koh ◽  
T. S. K. Prasad ◽  
C. Chahwan ◽  
...  

2018 ◽  
Vol 62 (4) ◽  
Author(s):  
Suvitha Subramaniam ◽  
Christoph D. Schmid ◽  
Xue Li Guan ◽  
Pascal Mäser

ABSTRACT Combinatorial chemotherapy is necessary for the treatment of malaria. However, finding a suitable partner drug for a new candidate is challenging. Here we develop an algorithm that identifies all of the gene pairs of Plasmodium falciparum that possess orthologues in yeast that have a synthetic lethal interaction but are absent in humans. This suggests new options for drug combinations, particularly for inhibitors of targets such as P. falciparum calcineurin, cation ATPase 4, or phosphatidylinositol 4-kinase.


Blood ◽  
2021 ◽  
Author(s):  
Miriam Butler ◽  
Dorette S van Ingen Schenau ◽  
Jiangyan Yu ◽  
Silvia Jenni ◽  
Maria Pamela Dobay ◽  
...  

Asparaginase (ASNase) therapy has been a mainstay of Acute Lymphoblastic Leukemia (ALL) protocols for decades and shows promise in the treatment of a variety of other cancers. To improve the efficacy of ASNase treatment, we employed a CRISPR/Cas9-based screen to identify actionable signaling intermediates that improve the response to ASNase. Both genetic inactivation of Bruton's Tyrosine Kinase (BTK) and pharmacological inhibition by the BTK inhibitor ibrutinib strongly synergize with ASNase by inhibiting the amino acid response pathway, a mechanism involving c-Myc mediated suppression of GCN2 activity. This synthetic lethal interaction was observed in 90% of patient derived xenografts, irrespective of the genomic subtype. Moreover, ibrutinib substantially improved ASNase treatment response in a murine PDX model. Hence, ibrutinib may be used to enhance the clinical efficacy of ASNase in ALL.


Cell Reports ◽  
2020 ◽  
Vol 33 (11) ◽  
pp. 108493 ◽  
Author(s):  
Jasper E. Neggers ◽  
Brenton R. Paolella ◽  
Adhana Asfaw ◽  
Michael V. Rothberg ◽  
Thomas A. Skipper ◽  
...  

2012 ◽  
Author(s):  
Alexander Whitley ◽  
Somaira Nowsheen ◽  
Tiffiny Cooper ◽  
Albert LoBuglio ◽  
James Bonner ◽  
...  

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