Connections and Integration with SAT Solvers: A Survey and a Case Study in Computational Biology

2010 ◽  
pp. 425-461 ◽  
Author(s):  
Fabien Corblin ◽  
Lucas Bordeaux ◽  
Eric Fanchon ◽  
Youssef Hamadi ◽  
Laurent Trilling
Keyword(s):  
Computational Biology ◽  
Sat Solvers

scholarly journals Tuning Parallel SAT Solvers

10.29007/z3g2 ◽  
2019 ◽  
Author(s):  
Thorsten Ehlers ◽  
Dirk Nowotka
Keyword(s):  
Model Checking ◽  
Database Management ◽  
Bounded Model Checking ◽  
Experimental Results ◽  
Massively Parallel ◽  
Sat Solving ◽  
Sat Solvers ◽  
Sat Solver ◽  
The Impact

In this paper we present new implementation details and benchmarking results for our parallel portfolio solver TopoSAT2. In particular, we discuss ideas and implementation details for the exchange of learned clauses in a massively-parallel SAT solver which is designed to run more that 1, 000 solver threads in parallel. Furthermore, we go back to the roots of portfolio SAT solving, and discuss the impact of diversifying the solver by using different restart- , branching- and clause database management heuristics. We show that these techniques can be used to tune the solver towards different problems. However, in a case study on formulas derived from Bounded Model Checking problems we see the best performance when using a rather simple clause exchange strategy. We show details of these tests and discuss possible explanations for this phenomenon.As computing times on massively-parallel clusters are expensive, we consider it especially interesting to share these kind of experimental results.

scholarly journals Modeling biological problems in computer science: a case study in genome assembly

2018 ◽  
Vol 20 (4) ◽  
pp. 1376-1383 ◽  
Author(s):  
Paul Medvedev
Keyword(s):  
Computational Biology ◽  
Computer Science ◽  
Genome Assembly ◽  
Variant Calling ◽  
Process Step ◽  
Modeling Process ◽  
Computer Scientists ◽  
Assembly Problem ◽  
Assembly Algorithms

Abstract As computer scientists working in bioinformatics/computational biology, we often face the challenge of coming up with an algorithm to answer a biological question. This occurs in many areas, such as variant calling, alignment and assembly. In this tutorial, we use the example of the genome assembly problem to demonstrate how to go from a question in the biological realm to a solution in the computer science realm. We show the modeling process step-by-step, including all the intermediate failed attempts. Please note this is not an introduction to how genome assembly algorithms work and, if treated as such, would be incomplete and unnecessarily long-winded.

The Genesis and Internal Dynamics of El Salvador's People's Revolutionary Army, 1970–1976

2014 ◽  
Vol 38 (01) ◽  
pp. 102-129
Author(s):  
ALBERTO MARTÍN ÁLVAREZ ◽  
EUDALD CORTINA ORERO
Keyword(s):  
Latin America ◽  
El Salvador ◽  
Early Years ◽  
Left Wing ◽  
Internal Dynamics ◽  
Internal Coherence ◽  
The 1960S

AbstractUsing interviews with former militants and previously unpublished documents, this article traces the genesis and internal dynamics of the Ejército Revolucionario del Pueblo (People's Revolutionary Army, ERP) in El Salvador during the early years of its existence (1970–6). This period was marked by the inability of the ERP to maintain internal coherence or any consensus on revolutionary strategy, which led to a series of splits and internal fights over control of the organisation. The evidence marshalled in this case study sheds new light on the origins of the armed Salvadorean Left and thus contributes to a wider understanding of the processes of formation and internal dynamics of armed left-wing groups that emerged from the 1960s onwards in Latin America.

Culture and the plasticity of perception

2020 ◽  
Vol 43 ◽  
Author(s):  
Michael Lifshitz ◽  
T. M. Luhrmann
Keyword(s):  
Cultural Context ◽  
Sensory Experience ◽  
Cultural Learning ◽  
The World

Abstract Culture shapes our basic sensory experience of the world. This is particularly striking in the study of religion and psychosis, where we and others have shown that cultural context determines both the structure and content of hallucination-like events. The cultural shaping of hallucinations may provide a rich case-study for linking cultural learning with emerging prediction-based models of perception.

Dual systems for all: Higher-order, role-based relational reasoning as a uniquely derived feature of human cognition

2019 ◽  
Vol 42 ◽  
Author(s):  
Daniel J. Povinelli ◽  
Gabrielle C. Glorioso ◽  
Shannon L. Kuznar ◽  
Mateja Pavlic
Keyword(s):  
Temporal Reasoning ◽  
Higher Order ◽  
Important Case ◽  
Human Cognition ◽  
Relational Reasoning ◽  
Dual Systems ◽  
First Order ◽  
Reasoning System ◽  
Role Based

Abstract Hoerl and McCormack demonstrate that although animals possess a sophisticated temporal updating system, there is no evidence that they also possess a temporal reasoning system. This important case study is directly related to the broader claim that although animals are manifestly capable of first-order (perceptually-based) relational reasoning, they lack the capacity for higher-order, role-based relational reasoning. We argue this distinction applies to all domains of cognition.

Sociocultural memory development research drives new directions in gadgetry science

2019 ◽  
Vol 42 ◽  
Author(s):  
Penny Van Bergen ◽  
John Sutton
Keyword(s):  
Episodic Memory ◽  
Autobiographical Memory ◽  
Developmental Psychology ◽  
Cross Cultural ◽  
Memory Development ◽  
Development Research ◽  
Cultural Research ◽  
New Directions ◽  
Cross Cultural Research

Abstract Sociocultural developmental psychology can drive new directions in gadgetry science. We use autobiographical memory, a compound capacity incorporating episodic memory, as a case study. Autobiographical memory emerges late in development, supported by interactions with parents. Intervention research highlights the causal influence of these interactions, whereas cross-cultural research demonstrates culturally determined diversity. Different patterns of inheritance are discussed.

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