Physiology and Genetics of C4-Dicarboxylate Transport in Rhodobacter capsulatus

Author(s):  
David J. Kelly ◽  
Mark J. Hamblin ◽  
Jonathan G. Shaw
1999 ◽  
Vol 181 (18) ◽  
pp. 5624-5635 ◽  
Author(s):  
Suzanne J. Davies ◽  
Paul Golby ◽  
Davood Omrani ◽  
Susan A. Broad ◽  
Vikki L. Harrington ◽  
...  

ABSTRACT The gene (dctA) encoding the aerobic C4-dicarboxylate transporter (DctA) of Escherichia coli was previously mapped to the 79-min region of the linkage map. The nucleotide sequence of this region reveals two candidates for the dctA gene: f428 at 79.3 min and theo157a-o424-o328 (or orfQMP) operon at 79.9 min. The f428 gene encodes a homologue of theSinorhizobium meliloti and Rhizobium leguminosarum H+/C4-dicarboxylate symporter, DctA, whereas the orfQMP operon encodes homologues of the aerobic periplasmic-binding protein- dependent C4-dicarboxylate transport system (DctQ, DctM, and DctP) ofRhodobacter capsulatus. To determine which, if either, of these loci specify the E. coli DctA system, the chromosomalf428 and orfM genes were inactivated by inserting Spr or Apr cassettes, respectively. The resulting f428 mutant was unable to grow aerobically with fumarate or malate as the sole carbon source and grew poorly with succinate. Furthermore, fumarate uptake was abolished in thef428 mutant and succinate transport was ∼10-fold lower than that of the wild type. The growth and fumarate transport deficiencies of the f428 mutant were complemented by transformation with an f428-containing plasmid. No growth defect was found for the orfM mutant. In combination, the above findings confirm that f428 corresponds to thedctA gene and indicate that the orfQMP products play no role in C4-dicarboxylate transport. Regulation studies with a dctA-lacZ (f428-lacZ) transcriptional fusion showed that dctA is subject to cyclic AMP receptor protein (CRP)-dependent catabolite repression and ArcA-mediated anaerobic repression and is weakly induced by the DcuS-DcuR system in response to C4-dicarboxylates and citrate. Interestingly, in a dctA mutant, expression ofdctA is constitutive with respect to C4-dicarboxylate induction, suggesting that DctA regulates its own synthesis. Northern blot analysis revealed a single, monocistronic dctA transcript and confirmed thatdctA is subject to regulation by catabolite repression and CRP. Reverse transcriptase-mediated primer extension indicated a single transcriptional start site centered 81 bp downstream of a strongly predicted CRP-binding site.


1999 ◽  
Vol 181 (4) ◽  
pp. 1238-1248 ◽  
Author(s):  
Paul Golby ◽  
Suzanne Davies ◽  
David J. Kelly ◽  
John R. Guest ◽  
Simon C. Andrews

ABSTRACT The dcuB gene of Escherichia coli encodes an anaerobic C4-dicarboxylate transporter that is induced anaerobically by FNR, activated by the cyclic AMP receptor protein, and repressed in the presence of nitrate by NarL. In addition,dcuB expression is strongly induced by C4-dicarboxylates, suggesting the presence of a novel C4-dicarboxylate-responsive regulator in E. coli. This paper describes the isolation of a Tn10mutant in which the 160-fold induction of dcuB expression by C4-dicarboxylates is absent. The corresponding Tn10 mutation resides in the yjdH gene, which is adjacent to the yjdG gene and close to thedcuB gene at ∼93.5 min in the E. colichromosome. The yjdHG genes (redesignateddcuSR) appear to constitute an operon encoding a two-component sensor-regulator system (DcuS-DcuR). A plasmid carrying the dcuSR operon restored the C4-dicarboxylate inducibility of dcuB expression in the dcuSmutant to levels exceeding those of the dcuS +strain by approximately 1.8-fold. The dcuS mutation affected the expression of other genes with roles in C4-dicarboxylate transport or metabolism. Expression of the fumarate reductase (frdABCD) operon and the aerobic C4-dicarboxylate transporter (dctA) gene were induced 22- and 4-fold, respectively, by the DcuS-DcuR system in the presence of C4-dicarboxylates. Surprisingly, anaerobic fumarate respiratory growth of the dcuS mutant was normal. However, under aerobic conditions with C4-dicarboxylates as sole carbon sources, the mutant exhibited a growth defect resembling that of a dctA mutant. Studies employing a dcuA dcuB dcuC triple mutant unable to transport C4-dicarboxylates anaerobically revealed that C4-dicarboxylate transport is not required for C4-dicarboxylate-responsive gene regulation. This suggests that the DcuS-DcuR system responds to external substrates. Accordingly, topology studies using 14 DcuS-BlaM fusions showed that DcuS contains two putative transmembrane helices flanking a ∼140-residue N-terminal domain apparently located in the periplasm. This topology strongly suggests that the periplasmic loop of DcuS serves as a C4-dicarboxylate sensor. The cytosolic region of DcuS (residues 203 to 543) contains two domains: a central PAS domain possibly acting as a second sensory domain and a C-terminal transmitter domain. Database searches showed that DcuS and DcuR are closely related to a subgroup of two-component sensor-regulators that includes the citrate-responsive CitA-CitB system of Klebsiella pneumoniae. DcuS is not closely related to the C4-dicarboxylate-sensing DctS or DctB protein ofRhodobacter capsulatus or rhizobial species, respectively. Although all three proteins have similar topologies and functions, and all are members of the two-component sensor-kinase family, their periplasmic domains appear to have evolved independently.


2021 ◽  
pp. 1-9
Author(s):  
Sevinc Adiloglu ◽  
Funda Eryilmaz Acikgoz ◽  
Korkmaz Belliturk ◽  
Muazzez Gurgan ◽  
Yusuf Solmaz ◽  
...  

1993 ◽  
Vol 268 (14) ◽  
pp. 10636-10644
Author(s):  
Y. Jouanneau ◽  
C. Meyer ◽  
J. Gaillard ◽  
E. Forest ◽  
J. Gagnon

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