ChIP on Chip and ChIP-Seq Assays: Genome-Wide Analysis of Transcription Factor Binding and Histone Modifications

2015 ◽  
pp. 447-472 ◽  
Author(s):  
Smitha Pillai ◽  
Srikumar P. Chellappan
Keyword(s):  
Transcription Factor ◽  
Histone Modifications ◽  
Transcription Factor Binding ◽  
Genome Wide Analysis ◽  
Factor Binding ◽  
Genome Wide ◽  
On Chip

scholarly journals Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

2008 ◽  
Vol 5 (9) ◽  
pp. 829-834 ◽  
Author(s):  
Anton Valouev ◽  
David S Johnson ◽  
Andreas Sundquist ◽  
Catherine Medina ◽  
Elizabeth Anton ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Binding Sites ◽  
Transcription Factor Binding Sites ◽  
Transcription Factor Binding ◽  
Genome Wide Analysis ◽  
Factor Binding ◽  
Genome Wide ◽  
On Chip

Genome-wide analysis of transcriptional regulators in human HSPCs reveals a densely interconnected network of coding and noncoding genes

Blood ◽  
2013 ◽  
Vol 122 (14) ◽  
pp. e12-e22 ◽  
Author(s):  
Dominik Beck ◽  
Julie A. I. Thoms ◽  
Dilmi Perera ◽  
Judith Schütte ◽  
Ashwin Unnikrishnan ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Transcriptional Regulators ◽  
Transcription Factor Binding ◽  
Integrative Analysis ◽  
Interconnected Network ◽  
Genome Wide Analysis ◽  
Factor Binding ◽  
Genome Wide ◽  
Key Points

Key Points Genome-wide binding profiles of FLI1, ERG, GATA2, RUNX1, SCL, LMO2, and LYL1 in human HSPCs reveals patterns of combinatorial TF binding. Integrative analysis of transcription factor binding reveals a densely interconnected network of coding and noncoding genes in human HSPCs.

scholarly journals An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-Seq

PLoS ONE ◽  
2011 ◽  
Vol 6 (2) ◽  
pp. e16432 ◽  
Author(s):  
Eloi Mercier ◽  
Arnaud Droit ◽  
Leping Li ◽  
Gordon Robertson ◽  
Xuekui Zhang ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Binding Sites ◽  
Transcription Factor Binding Sites ◽  
Transcription Factor Binding ◽  
Genome Wide Analysis ◽  
Factor Binding ◽  
Genome Wide
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