Understanding variation of species richness along latitudinal gradients, with more species toward the tropics, represents a challenge for ecologists. Species richness also varies according to the available area, with more species in larger regions, with area and latitude posited as major drivers of richness variations. However, species richness does not fully capture the evolutionary history behind those patterns. Phylogenetic diversity can provide insights on the role of time and evolutionary drivers of environmental gradients. We analyzed here the latitudinal gradient of endemic snakes from the Atlantic Forest of South America, a megadiverse and highly threatened portion of the Neotropics. We assessed the effect of area and average clade age on species richness and phylogenetic diversity, testing whether species richness and phylogenetic diversity increase with area availability and in lower latitudes. We found that area can predict species richness, but not phylogenetic diversity. Brazilian southeastern mountain ranges include larger patches of Atlantic Forest and the highest richness levels, but generally harboring snakes from relatively recent clades (neoendemics). There is a negative relationship between species richness and average clade age along the latitudinal gradient, with older clades found mainly in northern portions, increasing phylogenetic diversity at lower latitudes. Different dimensions of diversity, species richness and phylogenetic diversity, are thus affected in different ways by area and time for speciation in the Atlantic Forest, and this may be a trend in highly diverse tropical regions.